Hb_170077_010

Information

Type -
Description -
Location Contig170077: 9412-17805
Sequence    

Annotation

kegg
ID tcc:TCM_037920
description NSP-interacting GTPase, putative isoform 1
nr
ID XP_012078653.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
swissprot
ID Q8RXE7
description Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2
trembl
ID A0A067K7V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13231 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15907: 10312-17743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170077_010 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
2 Hb_000110_350 0.0436766908 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
3 Hb_005403_010 0.0472023044 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
4 Hb_023344_140 0.0561733921 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
5 Hb_000358_220 0.0586502636 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
6 Hb_000996_020 0.0614530139 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
7 Hb_002461_020 0.0627423849 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
8 Hb_000260_760 0.0635168127 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
9 Hb_004659_090 0.0659044319 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
10 Hb_003939_060 0.0659171192 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004517_020 0.06633335 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
12 Hb_000179_190 0.067279683 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
13 Hb_005333_140 0.0682916838 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
14 Hb_003929_210 0.0687262507 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
15 Hb_000046_600 0.0694684934 - - PREDICTED: cullin-1-like [Jatropha curcas]
16 Hb_000529_060 0.0694962943 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
17 Hb_005649_080 0.0695129266 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000030_140 0.069853639 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
19 Hb_020805_150 0.0699289125 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_004044_050 0.0700372013 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_170077_010 Hb_170077_010 Hb_000110_350 Hb_000110_350 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_000996_020 Hb_000996_020 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_005403_010--Hb_000046_600 Hb_005403_010--Hb_023344_140 Hb_000640_190 Hb_000640_190 Hb_005403_010--Hb_000640_190 Hb_005403_010--Hb_000110_350 Hb_000260_760 Hb_000260_760 Hb_005403_010--Hb_000260_760 Hb_023344_140--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_023344_140--Hb_005333_140 Hb_023344_140--Hb_000358_220 Hb_023344_140--Hb_000996_020 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_000996_020--Hb_005333_140 Hb_002461_020--Hb_005333_140 Hb_000030_140 Hb_000030_140 Hb_002461_020--Hb_000030_140 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99583 23.5254 16.9463 16.9325 10.7856 9.0777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61337 5.61502 7.67722 13.1604 16.3741

CAGE analysis