Hb_000030_140

Information

Type -
Description -
Location Contig30: 93229-113539
Sequence    

Annotation

kegg
ID rcu:RCOM_1121820
description hypothetical protein
nr
ID XP_012092684.1
description PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
swissprot
ID O75175
description CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1
trembl
ID A0A067JC18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06854 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ccr4-not transcription complex subunit 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31496: 93365-113446 , PASA_asmbl_31498: 108446-111195 , PASA_asmbl_31499: 103616-104330
cDNA
(Sanger)
(ID:Location)		 035_H08.ab1: 93365-106657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_140 0.0 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
2 Hb_000260_760 0.0492552317 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
3 Hb_002461_020 0.0499863936 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
4 Hb_000996_020 0.0599362838 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
5 Hb_000035_100 0.0647079135 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_005333_140 0.0676727431 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
7 Hb_000110_350 0.0680505224 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_005305_100 0.0688067133 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_008642_060 0.0697674522 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
10 Hb_170077_010 0.069853639 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
11 Hb_009178_010 0.0706480474 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
12 Hb_013358_060 0.0715348178 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
13 Hb_000179_190 0.072857485 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
14 Hb_005885_030 0.0734180364 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_000445_060 0.0736075268 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_003929_210 0.0740993682 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_009158_060 0.0741447716 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
18 Hb_000358_220 0.0743055967 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
19 Hb_005403_010 0.0745141629 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
20 Hb_000034_110 0.0749090587 - - sentrin/sumo-specific protease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000030_140 Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_000030_140--Hb_000260_760 Hb_002461_020 Hb_002461_020 Hb_000030_140--Hb_002461_020 Hb_000996_020 Hb_000996_020 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000110_350 Hb_000110_350 Hb_000030_140--Hb_000110_350 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000260_760--Hb_000996_020 Hb_009178_010 Hb_009178_010 Hb_000260_760--Hb_009178_010 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_002461_020--Hb_005333_140 Hb_002461_020--Hb_000996_020 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_002461_020--Hb_170077_010 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_000996_020--Hb_005333_140 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_008165_020 Hb_008165_020 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_005333_140--Hb_000529_060 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_000046_600 Hb_000046_600 Hb_005333_140--Hb_000046_600 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.36894 14.1429 12.339 7.47649 5.67566 4.70121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09331 3.42382 3.26405 8.02589 11.3587

CAGE analysis