Hb_000428_030

Information

Type -
Description -
Location Contig428: 72476-77150
Sequence    

Annotation

kegg
ID rcu:RCOM_1520720
description hypothetical protein
nr
ID XP_002524266.1
description hypothetical protein RCOM_1520720 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SE51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1520720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42071: 73566-74825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000428_030 0.0 - - hypothetical protein RCOM_1520720 [Ricinus communis]
2 Hb_000260_760 0.0596878806 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
3 Hb_002078_470 0.0638138883 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
4 Hb_000331_100 0.0640484357 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
5 Hb_008165_020 0.0656428732 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
6 Hb_004551_020 0.0669221797 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
7 Hb_000200_110 0.0682813667 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
8 Hb_013358_060 0.0692205344 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
9 Hb_143629_020 0.0706800669 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
10 Hb_000035_100 0.0713390153 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_001341_160 0.0731947842 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
12 Hb_000172_340 0.0741383793 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
13 Hb_000373_170 0.0742848185 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
14 Hb_001904_030 0.0751348266 - - PREDICTED: importin-5 [Jatropha curcas]
15 Hb_003939_060 0.0769509358 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000220_120 0.0783649228 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
17 Hb_000170_100 0.0796003194 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
18 Hb_000030_140 0.0799455627 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
19 Hb_006478_030 0.0805271952 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
20 Hb_007245_020 0.081410072 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000428_030 Hb_000428_030 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_002078_470 Hb_002078_470 Hb_000428_030--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_004551_020 Hb_004551_020 Hb_000428_030--Hb_004551_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_000030_140 Hb_000030_140 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_009178_010 Hb_009178_010 Hb_000260_760--Hb_009178_010 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_013358_060 Hb_013358_060 Hb_002078_470--Hb_013358_060 Hb_003124_270 Hb_003124_270 Hb_002078_470--Hb_003124_270 Hb_002078_470--Hb_004551_020 Hb_143629_020 Hb_143629_020 Hb_002078_470--Hb_143629_020 Hb_004586_090 Hb_004586_090 Hb_002078_470--Hb_004586_090 Hb_000331_100--Hb_008165_020 Hb_000331_100--Hb_013358_060 Hb_000035_100 Hb_000035_100 Hb_000331_100--Hb_000035_100 Hb_003964_110 Hb_003964_110 Hb_000331_100--Hb_003964_110 Hb_009476_120 Hb_009476_120 Hb_000331_100--Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_012490_010 Hb_012490_010 Hb_004551_020--Hb_012490_010 Hb_008686_020 Hb_008686_020 Hb_004551_020--Hb_008686_020 Hb_007012_040 Hb_007012_040 Hb_004551_020--Hb_007012_040 Hb_004551_020--Hb_000035_100 Hb_001477_020 Hb_001477_020 Hb_000200_110--Hb_001477_020 Hb_000220_120 Hb_000220_120 Hb_000200_110--Hb_000220_120 Hb_000243_400 Hb_000243_400 Hb_000200_110--Hb_000243_400 Hb_000200_110--Hb_000331_100 Hb_000200_110--Hb_143629_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29443 10.9733 6.91361 5.59268 3.69775 4.30207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07465 2.4795 2.43182 7.3196 8.03491

CAGE analysis