Hb_143629_020

Information

Type -
Description -
Location Contig143629: 4162-10995
Sequence    

Annotation

kegg
ID rcu:RCOM_1437240
description hypothetical protein
nr
ID XP_012088786.1
description PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23142 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11475: 4965-8587 , PASA_asmbl_11476: 6728-7155 , PASA_asmbl_11477: 6945-8574 , PASA_asmbl_11478: 8600-9086 , PASA_asmbl_11479: 9103-10927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_020 0.0 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
2 Hb_004586_090 0.0655930947 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
3 Hb_006794_020 0.0685650822 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
4 Hb_000428_030 0.0706800669 - - hypothetical protein RCOM_1520720 [Ricinus communis]
5 Hb_160608_010 0.0715295511 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
6 Hb_002809_160 0.0720938868 - - PREDICTED: protein FAM63A [Jatropha curcas]
7 Hb_002078_470 0.07368171 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
8 Hb_013358_060 0.0762737866 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
9 Hb_000172_360 0.0792282645 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
10 Hb_000331_100 0.0802393124 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
11 Hb_006478_030 0.0805168031 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
12 Hb_000200_110 0.0807126636 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
13 Hb_003964_110 0.081539662 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
14 Hb_000243_400 0.082004231 - - PREDICTED: nucleolin-like [Jatropha curcas]
15 Hb_000665_260 0.0832180333 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
16 Hb_008165_020 0.0837000669 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
17 Hb_000260_760 0.0860300139 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
18 Hb_001414_010 0.0877587172 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
19 Hb_009476_120 0.0889580422 - - Clathrin heavy chain 1 [Glycine soja]
20 Hb_000220_120 0.0899163466 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_143629_020 Hb_143629_020 Hb_004586_090 Hb_004586_090 Hb_143629_020--Hb_004586_090 Hb_006794_020 Hb_006794_020 Hb_143629_020--Hb_006794_020 Hb_000428_030 Hb_000428_030 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_002078_470 Hb_002078_470 Hb_143629_020--Hb_002078_470 Hb_000243_400 Hb_000243_400 Hb_004586_090--Hb_000243_400 Hb_003124_270 Hb_003124_270 Hb_004586_090--Hb_003124_270 Hb_005181_050 Hb_005181_050 Hb_004586_090--Hb_005181_050 Hb_004586_090--Hb_002078_470 Hb_000844_050 Hb_000844_050 Hb_004586_090--Hb_000844_050 Hb_013358_060 Hb_013358_060 Hb_006794_020--Hb_013358_060 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_000270_700 Hb_000270_700 Hb_006794_020--Hb_000270_700 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_000428_030--Hb_002078_470 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_004551_020 Hb_004551_020 Hb_000428_030--Hb_004551_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_003661_010 Hb_003661_010 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_001414_010 Hb_001414_010 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_002809_160--Hb_005305_130 Hb_009078_020 Hb_009078_020 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_002078_470--Hb_013358_060 Hb_002078_470--Hb_003124_270 Hb_002078_470--Hb_004551_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58739 6.77083 5.85525 3.98335 2.25358 2.37635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0959 1.26825 1.47763 6.21353 6.37657

CAGE analysis