Hb_006794_020

Information

Type -
Description -
Location Contig6794: 14908-16197
Sequence    

Annotation

kegg
ID rcu:RCOM_1685990
description hypothetical protein
nr
ID XP_012086963.1
description PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006794_020 0.0 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
2 Hb_013358_060 0.0675421503 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
3 Hb_143629_020 0.0685650822 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
4 Hb_005885_030 0.06988831 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
5 Hb_010775_010 0.0748848158 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
6 Hb_000331_100 0.0819261387 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
7 Hb_000270_700 0.0857363981 - - PREDICTED: protease Do-like 9 [Populus euphratica]
8 Hb_000243_400 0.0878014435 - - PREDICTED: nucleolin-like [Jatropha curcas]
9 Hb_002809_160 0.0882587303 - - PREDICTED: protein FAM63A [Jatropha curcas]
10 Hb_002248_120 0.0889733493 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_000227_320 0.0896247987 - - unnamed protein product [Vitis vinifera]
12 Hb_002078_470 0.0896384263 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
13 Hb_005288_050 0.0900811353 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
14 Hb_000428_030 0.0910871905 - - hypothetical protein RCOM_1520720 [Ricinus communis]
15 Hb_000665_260 0.091294443 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
16 Hb_004586_090 0.0939144546 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
17 Hb_001133_090 0.0943511385 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
18 Hb_000133_090 0.0947931196 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
19 Hb_159295_010 0.0950018145 - - hypothetical protein RCOM_1520720 [Ricinus communis]
20 Hb_003964_110 0.0962173717 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006794_020 Hb_006794_020 Hb_013358_060 Hb_013358_060 Hb_006794_020--Hb_013358_060 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_000270_700 Hb_000270_700 Hb_006794_020--Hb_000270_700 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_004586_090 Hb_004586_090 Hb_143629_020--Hb_004586_090 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_143629_020--Hb_002078_470 Hb_005885_030--Hb_010775_010 Hb_002686_410 Hb_002686_410 Hb_005885_030--Hb_002686_410 Hb_005885_030--Hb_000270_700 Hb_002248_120 Hb_002248_120 Hb_005885_030--Hb_002248_120 Hb_001133_090 Hb_001133_090 Hb_005885_030--Hb_001133_090 Hb_010775_010--Hb_013358_060 Hb_010775_010--Hb_001133_090 Hb_001488_210 Hb_001488_210 Hb_010775_010--Hb_001488_210 Hb_010775_010--Hb_002686_410 Hb_008165_020 Hb_008165_020 Hb_000331_100--Hb_008165_020 Hb_000331_100--Hb_000428_030 Hb_000331_100--Hb_000035_100 Hb_003964_110 Hb_003964_110 Hb_000331_100--Hb_003964_110 Hb_009476_120 Hb_009476_120 Hb_000331_100--Hb_009476_120 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_000418_050 Hb_000418_050 Hb_000270_700--Hb_000418_050 Hb_000270_700--Hb_002686_410 Hb_000270_700--Hb_003725_010 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.07278 16.5503 11.2148 7.6634 3.93857 3.69005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74979 1.66935 2.62436 9.78368 10.952

CAGE analysis