Hb_009476_120

Information

Type -
Description -
Location Contig9476: 126111-138240
Sequence    

Annotation

kegg
ID gmx:100802224
description clathrin heavy chain 1-like
nr
ID KHN31288.1
description Clathrin heavy chain 1 [Glycine soja]
swissprot
ID Q2RBN7
description Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica GN=Os11g0104900 PE=3 SV=1
trembl
ID A0A0B2RH83
description Clathrin heavy chain 1 OS=Glycine soja GN=glysoja_022942 PE=4 SV=1
Gene Ontology
ID GO:0030130
description clathrin heavy chain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63302: 125828-138544
cDNA
(Sanger)
(ID:Location)		 009_I07.ab1: 125828-129229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_120 0.0 - - Clathrin heavy chain 1 [Glycine soja]
2 Hb_001414_010 0.0611811949 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
3 Hb_008165_020 0.0621333602 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
4 Hb_001511_180 0.0687068263 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
5 Hb_160608_010 0.0694688355 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
6 Hb_003124_270 0.0724178691 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
7 Hb_021977_010 0.0729768701 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
8 Hb_007245_020 0.0766202416 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
9 Hb_000358_220 0.0769252888 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
10 Hb_000331_100 0.0777060614 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
11 Hb_001226_110 0.0778395592 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
12 Hb_000844_050 0.0781045737 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
13 Hb_004884_090 0.0787850356 - - importin beta-1, putative [Ricinus communis]
14 Hb_006478_030 0.0804981457 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
15 Hb_003661_010 0.0809792981 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
16 Hb_003964_110 0.0822276577 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
17 Hb_000599_360 0.0822765787 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_000809_250 0.0829238554 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
19 Hb_005000_090 0.0841898612 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
20 Hb_048476_080 0.0850622124 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]

Gene co-expression network

sample Hb_009476_120 Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_009476_120--Hb_001414_010 Hb_008165_020 Hb_008165_020 Hb_009476_120--Hb_008165_020 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_160608_010 Hb_160608_010 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_021977_010 Hb_021977_010 Hb_009476_120--Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_003661_010 Hb_003661_010 Hb_001414_010--Hb_003661_010 Hb_001414_010--Hb_008165_020 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_001414_010--Hb_160608_010 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_033799_010 Hb_033799_010 Hb_001511_180--Hb_033799_010 Hb_002817_060 Hb_002817_060 Hb_001511_180--Hb_002817_060 Hb_005074_020 Hb_005074_020 Hb_001511_180--Hb_005074_020 Hb_000890_070 Hb_000890_070 Hb_001511_180--Hb_000890_070 Hb_000347_300 Hb_000347_300 Hb_001511_180--Hb_000347_300 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_001998_220 Hb_001998_220 Hb_021977_010--Hb_001998_220 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3497 59.0437 42.1508 54.8743 22.027 25.4309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.45685 11.0719 20.4552 46.848 59.6833

CAGE analysis