Hb_000809_250

Information

Type -
Description -
Location Contig809: 228259-238727
Sequence    

Annotation

kegg
ID rcu:RCOM_0601570
description hypothetical protein
nr
ID XP_012079205.1
description PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
swissprot
ID Q08DV9
description Transmembrane protein 131-like OS=Bos taurus PE=2 SV=2
trembl
ID A0A067KJ93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12365 PE=4 SV=1
Gene Ontology
ID GO:0006807
description o-glycosyl hydrolases family 17 isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59174: 228298-229087 , PASA_asmbl_59175: 229222-230288 , PASA_asmbl_59177: 237239-238678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_250 0.0 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
2 Hb_000844_050 0.0556522014 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
3 Hb_003124_270 0.0625370141 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
4 Hb_003680_020 0.0659299183 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_001998_150 0.0707271043 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
6 Hb_003661_010 0.0714740721 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
7 Hb_005181_050 0.0734931919 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
8 Hb_004884_090 0.0776879819 - - importin beta-1, putative [Ricinus communis]
9 Hb_048476_080 0.0791081483 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
10 Hb_009476_120 0.0829238554 - - Clathrin heavy chain 1 [Glycine soja]
11 Hb_001998_220 0.0834758084 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
12 Hb_000167_120 0.0873941144 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
13 Hb_006210_010 0.0882598568 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
14 Hb_007012_040 0.0889449699 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
15 Hb_000059_240 0.0893019721 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
16 Hb_000347_300 0.0894878794 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
17 Hb_000300_030 0.0904663433 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
18 Hb_021977_010 0.090634945 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
19 Hb_002609_080 0.0916120337 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
20 Hb_001511_180 0.091921122 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_000809_250 Hb_000809_250 Hb_000844_050 Hb_000844_050 Hb_000809_250--Hb_000844_050 Hb_003124_270 Hb_003124_270 Hb_000809_250--Hb_003124_270 Hb_003680_020 Hb_003680_020 Hb_000809_250--Hb_003680_020 Hb_001998_150 Hb_001998_150 Hb_000809_250--Hb_001998_150 Hb_003661_010 Hb_003661_010 Hb_000809_250--Hb_003661_010 Hb_005181_050 Hb_005181_050 Hb_000809_250--Hb_005181_050 Hb_048476_080 Hb_048476_080 Hb_000844_050--Hb_048476_080 Hb_000844_050--Hb_003124_270 Hb_000844_050--Hb_003661_010 Hb_000844_050--Hb_003680_020 Hb_001507_050 Hb_001507_050 Hb_000844_050--Hb_001507_050 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_003124_270--Hb_005181_050 Hb_003124_270--Hb_003680_020 Hb_000960_080 Hb_000960_080 Hb_003680_020--Hb_000960_080 Hb_003680_020--Hb_001507_050 Hb_003680_020--Hb_003661_010 Hb_003680_020--Hb_048476_080 Hb_000059_240 Hb_000059_240 Hb_003680_020--Hb_000059_240 Hb_001998_150--Hb_000844_050 Hb_000167_120 Hb_000167_120 Hb_001998_150--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001998_150--Hb_000025_500 Hb_007313_040 Hb_007313_040 Hb_001998_150--Hb_007313_040 Hb_001998_150--Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_000300_030 Hb_000300_030 Hb_003661_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_003661_010--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_003661_010--Hb_001414_010 Hb_005181_050--Hb_000167_120 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_005181_050--Hb_000844_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4603 8.86394 4.77291 8.52683 2.88023 3.12331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00213 1.83122 3.15742 6.83413 10.7097

CAGE analysis