Hb_007313_040

Information

Type -
Description -
Location Contig7313: 39474-47412
Sequence    

Annotation

kegg
ID rcu:RCOM_1429820
description breast carcinoma amplified sequence, putative
nr
ID KDP23568.1
description hypothetical protein JCGZ_23401 [Jatropha curcas]
swissprot
ID Q8H1Q5
description Autophagy-related protein 18h OS=Arabidopsis thaliana GN=ATG18H PE=2 SV=1
trembl
ID A0A067JL47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23401 PE=4 SV=1
Gene Ontology
ID GO:0000166
description autophagy-related protein 18h-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56016: 40035-42094 , PASA_asmbl_56017: 42723-43544 , PASA_asmbl_56018: 44004-44374 , PASA_asmbl_56019: 44375-47543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_040 0.0 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
2 Hb_002311_130 0.0792627971 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
3 Hb_001998_150 0.0927014393 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
4 Hb_001473_170 0.0958491865 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
5 Hb_000167_120 0.0985197037 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
6 Hb_003517_070 0.1023135108 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
7 Hb_000025_500 0.1036859983 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000803_320 0.1038296127 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
9 Hb_002805_090 0.1038783782 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_001117_110 0.1049379706 - - PREDICTED: dynamin-2A [Jatropha curcas]
11 Hb_002611_010 0.1071762429 - - amino acid transporter, putative [Ricinus communis]
12 Hb_055690_010 0.1073540143 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
13 Hb_002400_060 0.1083809389 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
14 Hb_001627_040 0.108650597 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
15 Hb_000258_050 0.1088283575 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
16 Hb_002150_020 0.1091001801 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001029_040 0.1107537612 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
18 Hb_005694_060 0.1110414719 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
19 Hb_001998_220 0.1110593621 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
20 Hb_000284_220 0.1113538706 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]

Gene co-expression network

sample Hb_007313_040 Hb_007313_040 Hb_002311_130 Hb_002311_130 Hb_007313_040--Hb_002311_130 Hb_001998_150 Hb_001998_150 Hb_007313_040--Hb_001998_150 Hb_001473_170 Hb_001473_170 Hb_007313_040--Hb_001473_170 Hb_000167_120 Hb_000167_120 Hb_007313_040--Hb_000167_120 Hb_003517_070 Hb_003517_070 Hb_007313_040--Hb_003517_070 Hb_000025_500 Hb_000025_500 Hb_007313_040--Hb_000025_500 Hb_002805_090 Hb_002805_090 Hb_002311_130--Hb_002805_090 Hb_002400_060 Hb_002400_060 Hb_002311_130--Hb_002400_060 Hb_001998_220 Hb_001998_220 Hb_002311_130--Hb_001998_220 Hb_002311_130--Hb_001473_170 Hb_005000_090 Hb_005000_090 Hb_002311_130--Hb_005000_090 Hb_000809_250 Hb_000809_250 Hb_001998_150--Hb_000809_250 Hb_000844_050 Hb_000844_050 Hb_001998_150--Hb_000844_050 Hb_001998_150--Hb_000167_120 Hb_001998_150--Hb_000025_500 Hb_048476_080 Hb_048476_080 Hb_001998_150--Hb_048476_080 Hb_010390_010 Hb_010390_010 Hb_001473_170--Hb_010390_010 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_000494_030 Hb_000494_030 Hb_001473_170--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_001473_170--Hb_004030_060 Hb_005181_050 Hb_005181_050 Hb_000167_120--Hb_005181_050 Hb_000167_120--Hb_000844_050 Hb_003124_270 Hb_003124_270 Hb_000167_120--Hb_003124_270 Hb_000167_120--Hb_000025_500 Hb_003680_020 Hb_003680_020 Hb_000167_120--Hb_003680_020 Hb_003340_010 Hb_003340_010 Hb_003517_070--Hb_003340_010 Hb_004917_010 Hb_004917_010 Hb_003517_070--Hb_004917_010 Hb_001975_150 Hb_001975_150 Hb_003517_070--Hb_001975_150 Hb_000392_160 Hb_000392_160 Hb_003517_070--Hb_000392_160 Hb_000803_320 Hb_000803_320 Hb_003517_070--Hb_000803_320 Hb_001080_300 Hb_001080_300 Hb_003517_070--Hb_001080_300 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.701797 3.59031 2.40322 5.39988 1.24518 1.33722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01244 1.88595 1.62354 3.01413 6.59774

CAGE analysis