Hb_000392_160

Information

Type -
Description -
Location Contig392: 147805-152890
Sequence    

Annotation

kegg
ID rcu:RCOM_1515000
description ATP binding protein, putative
nr
ID XP_012080255.1
description PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
swissprot
ID B9DFI7
description Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=2 SV=2
trembl
ID A0A067K4W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11617 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39248: 150410-152550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_160 0.0 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
2 Hb_000183_030 0.0839458649 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
3 Hb_003517_070 0.0850889406 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
4 Hb_000484_010 0.0858032727 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
5 Hb_002025_030 0.0865849285 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_001975_150 0.1022751334 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
7 Hb_000803_320 0.1039944481 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
8 Hb_011537_060 0.1047886591 - - UPF0061 protein azo1574 [Morus notabilis]
9 Hb_003340_010 0.1055930269 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
10 Hb_000941_150 0.1066913554 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
11 Hb_002609_080 0.1100282765 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
12 Hb_002611_010 0.1102462728 - - amino acid transporter, putative [Ricinus communis]
13 Hb_004917_010 0.1107037889 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
14 Hb_011485_060 0.1133607201 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
15 Hb_001691_200 0.1139208756 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
16 Hb_000358_050 0.11582398 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
17 Hb_002768_060 0.1168884134 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
18 Hb_003211_030 0.1177559483 - - -
19 Hb_000635_060 0.1200722709 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_000363_040 0.1201581907 - - Protein transport protein Sec24A, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_160 Hb_000392_160 Hb_000183_030 Hb_000183_030 Hb_000392_160--Hb_000183_030 Hb_003517_070 Hb_003517_070 Hb_000392_160--Hb_003517_070 Hb_000484_010 Hb_000484_010 Hb_000392_160--Hb_000484_010 Hb_002025_030 Hb_002025_030 Hb_000392_160--Hb_002025_030 Hb_001975_150 Hb_001975_150 Hb_000392_160--Hb_001975_150 Hb_000803_320 Hb_000803_320 Hb_000392_160--Hb_000803_320 Hb_000183_030--Hb_000484_010 Hb_000941_150 Hb_000941_150 Hb_000183_030--Hb_000941_150 Hb_001865_070 Hb_001865_070 Hb_000183_030--Hb_001865_070 Hb_000183_030--Hb_002025_030 Hb_015292_060 Hb_015292_060 Hb_000183_030--Hb_015292_060 Hb_003340_010 Hb_003340_010 Hb_003517_070--Hb_003340_010 Hb_004917_010 Hb_004917_010 Hb_003517_070--Hb_004917_010 Hb_003517_070--Hb_001975_150 Hb_003517_070--Hb_000803_320 Hb_001080_300 Hb_001080_300 Hb_003517_070--Hb_001080_300 Hb_000484_010--Hb_002025_030 Hb_000484_010--Hb_004917_010 Hb_002609_080 Hb_002609_080 Hb_000484_010--Hb_002609_080 Hb_001377_100 Hb_001377_100 Hb_000484_010--Hb_001377_100 Hb_002025_030--Hb_000803_320 Hb_002025_030--Hb_003340_010 Hb_002025_030--Hb_003517_070 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_000504_180 Hb_000504_180 Hb_001975_150--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_002874_110 Hb_002874_110 Hb_000803_320--Hb_002874_110 Hb_000270_390 Hb_000270_390 Hb_000803_320--Hb_000270_390 Hb_009288_020 Hb_009288_020 Hb_000803_320--Hb_009288_020 Hb_000803_320--Hb_000504_180 Hb_009178_060 Hb_009178_060 Hb_000803_320--Hb_009178_060 Hb_006663_060 Hb_006663_060 Hb_000803_320--Hb_006663_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.936272 2.08453 0.977535 2.76854 1.02625 1.19267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08749 1.39769 1.79359 3.56299 5.30241

CAGE analysis