Hb_000183_030

Information

Type -
Description -
Location Contig183: 68218-70897
Sequence    

Annotation

kegg
ID cic:CICLE_v10014254mg
description hypothetical protein
nr
ID XP_011043155.1
description PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
swissprot
ID Q8H329
description Metal tolerance protein 8 OS=Oryza sativa subsp. japonica GN=MTP8 PE=2 SV=2
trembl
ID V4W1E4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014254mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation efflux family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17853: 68645-71342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000183_030 0.0 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
2 Hb_000484_010 0.0748793464 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
3 Hb_000392_160 0.0839458649 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
4 Hb_000941_150 0.0887359598 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
5 Hb_001865_070 0.0930737194 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
6 Hb_002025_030 0.0968858137 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_015292_060 0.1040821622 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
8 Hb_002768_060 0.1049852663 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
9 Hb_000589_380 0.1056964652 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
10 Hb_004917_010 0.1113790846 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
11 Hb_000358_050 0.1113816564 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
12 Hb_000976_100 0.1140763402 - - eukaryotic translation elongation factor, putative [Ricinus communis]
13 Hb_002823_010 0.1146321111 - - -
14 Hb_135572_010 0.1159337612 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
15 Hb_023344_160 0.1161071335 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
16 Hb_002609_080 0.1173222975 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
17 Hb_001377_100 0.1174289154 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
18 Hb_000363_040 0.1183376317 - - Protein transport protein Sec24A, putative [Ricinus communis]
19 Hb_002686_090 0.1196858459 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
20 Hb_004019_120 0.1204967573 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000183_030 Hb_000183_030 Hb_000484_010 Hb_000484_010 Hb_000183_030--Hb_000484_010 Hb_000392_160 Hb_000392_160 Hb_000183_030--Hb_000392_160 Hb_000941_150 Hb_000941_150 Hb_000183_030--Hb_000941_150 Hb_001865_070 Hb_001865_070 Hb_000183_030--Hb_001865_070 Hb_002025_030 Hb_002025_030 Hb_000183_030--Hb_002025_030 Hb_015292_060 Hb_015292_060 Hb_000183_030--Hb_015292_060 Hb_000484_010--Hb_002025_030 Hb_004917_010 Hb_004917_010 Hb_000484_010--Hb_004917_010 Hb_002609_080 Hb_002609_080 Hb_000484_010--Hb_002609_080 Hb_000484_010--Hb_000392_160 Hb_001377_100 Hb_001377_100 Hb_000484_010--Hb_001377_100 Hb_003517_070 Hb_003517_070 Hb_000392_160--Hb_003517_070 Hb_000392_160--Hb_002025_030 Hb_001975_150 Hb_001975_150 Hb_000392_160--Hb_001975_150 Hb_000803_320 Hb_000803_320 Hb_000392_160--Hb_000803_320 Hb_000409_030 Hb_000409_030 Hb_000941_150--Hb_000409_030 Hb_000976_100 Hb_000976_100 Hb_000941_150--Hb_000976_100 Hb_002099_080 Hb_002099_080 Hb_000941_150--Hb_002099_080 Hb_000922_030 Hb_000922_030 Hb_000941_150--Hb_000922_030 Hb_007820_010 Hb_007820_010 Hb_000941_150--Hb_007820_010 Hb_002686_090 Hb_002686_090 Hb_001865_070--Hb_002686_090 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_000672_040 Hb_000672_040 Hb_001865_070--Hb_000672_040 Hb_005736_020 Hb_005736_020 Hb_001865_070--Hb_005736_020 Hb_001157_240 Hb_001157_240 Hb_001865_070--Hb_001157_240 Hb_002025_030--Hb_000803_320 Hb_003340_010 Hb_003340_010 Hb_002025_030--Hb_003340_010 Hb_002025_030--Hb_003517_070 Hb_015292_060--Hb_001377_100 Hb_009486_090 Hb_009486_090 Hb_015292_060--Hb_009486_090 Hb_000890_070 Hb_000890_070 Hb_015292_060--Hb_000890_070 Hb_135572_010 Hb_135572_010 Hb_015292_060--Hb_135572_010 Hb_000022_160 Hb_000022_160 Hb_015292_060--Hb_000022_160 Hb_015292_060--Hb_000922_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92694 9.03594 2.28308 9.37004 4.09726 5.911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53084 3.78994 8.84996 11.6252 16.581

CAGE analysis