Hb_000484_010

Information

Type -
Description -
Location Contig484: 6695-14997
Sequence    

Annotation

kegg
ID rcu:RCOM_0978050
description hypothetical protein
nr
ID XP_012081812.1
description PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
swissprot
ID Q9ZVX1
description Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=1 SV=1
trembl
ID A0A067KBQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18842 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable ubiquitin-conjugating enzyme e2 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44902: 7274-12790 , PASA_asmbl_44903: 6812-12790 , PASA_asmbl_44905: 13797-14996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000484_010 0.0 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
2 Hb_002025_030 0.0688694756 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_000183_030 0.0748793464 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
4 Hb_004917_010 0.0825226509 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
5 Hb_002609_080 0.0853024531 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
6 Hb_000392_160 0.0858032727 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
7 Hb_001377_100 0.0915371378 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
8 Hb_003340_010 0.0935354258 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
9 Hb_005181_050 0.0955482199 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
10 Hb_023344_160 0.0969896745 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
11 Hb_002817_060 0.0980312828 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
12 Hb_005977_070 0.0980357692 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
13 Hb_000941_150 0.0989278129 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
14 Hb_003517_070 0.0990579977 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
15 Hb_001341_010 0.0993084576 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
16 Hb_012506_040 0.0995005935 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
17 Hb_000465_280 0.099598377 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
18 Hb_171554_040 0.0997844782 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
19 Hb_000167_120 0.1006283546 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
20 Hb_000803_320 0.101297716 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]

Gene co-expression network

sample Hb_000484_010 Hb_000484_010 Hb_002025_030 Hb_002025_030 Hb_000484_010--Hb_002025_030 Hb_000183_030 Hb_000183_030 Hb_000484_010--Hb_000183_030 Hb_004917_010 Hb_004917_010 Hb_000484_010--Hb_004917_010 Hb_002609_080 Hb_002609_080 Hb_000484_010--Hb_002609_080 Hb_000392_160 Hb_000392_160 Hb_000484_010--Hb_000392_160 Hb_001377_100 Hb_001377_100 Hb_000484_010--Hb_001377_100 Hb_002025_030--Hb_000392_160 Hb_000803_320 Hb_000803_320 Hb_002025_030--Hb_000803_320 Hb_003340_010 Hb_003340_010 Hb_002025_030--Hb_003340_010 Hb_003517_070 Hb_003517_070 Hb_002025_030--Hb_003517_070 Hb_002025_030--Hb_000183_030 Hb_000183_030--Hb_000392_160 Hb_000941_150 Hb_000941_150 Hb_000183_030--Hb_000941_150 Hb_001865_070 Hb_001865_070 Hb_000183_030--Hb_001865_070 Hb_015292_060 Hb_015292_060 Hb_000183_030--Hb_015292_060 Hb_004917_010--Hb_003517_070 Hb_004917_010--Hb_003340_010 Hb_004917_010--Hb_002025_030 Hb_023344_160 Hb_023344_160 Hb_004917_010--Hb_023344_160 Hb_004917_010--Hb_000392_160 Hb_004306_120 Hb_004306_120 Hb_002609_080--Hb_004306_120 Hb_011021_050 Hb_011021_050 Hb_002609_080--Hb_011021_050 Hb_001691_200 Hb_001691_200 Hb_002609_080--Hb_001691_200 Hb_002609_080--Hb_001377_100 Hb_003849_280 Hb_003849_280 Hb_002609_080--Hb_003849_280 Hb_005181_050 Hb_005181_050 Hb_002609_080--Hb_005181_050 Hb_000392_160--Hb_003517_070 Hb_001975_150 Hb_001975_150 Hb_000392_160--Hb_001975_150 Hb_000392_160--Hb_000803_320 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02207 10.8428 4.49359 10.5731 3.52966 5.55069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10018 3.86293 7.72879 10.1159 18.1006

CAGE analysis