Hb_001691_200

Information

Type -
Description -
Location Contig1691: 257273-269665
Sequence    

Annotation

kegg
ID rcu:RCOM_0936370
description DNA-directed RNA polymerase II subunit, putative
nr
ID XP_011396369.1
description DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
swissprot
ID Q42877
description DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1
trembl
ID B9RZ91
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_0936370 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase ii subunit rpb2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15733: 257508-269593 , PASA_asmbl_15735: 257508-266497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_200 0.0 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
2 Hb_002631_210 0.0668608426 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
3 Hb_004208_050 0.0713338758 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
4 Hb_011883_020 0.0740457037 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
5 Hb_002609_080 0.0758622205 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
6 Hb_005181_050 0.0785342355 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
7 Hb_000270_170 0.0812700916 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
8 Hb_000059_240 0.0815909307 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
9 Hb_004218_180 0.0823296964 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
10 Hb_005074_020 0.083216287 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
11 Hb_011485_060 0.0852590772 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
12 Hb_011537_060 0.0859510673 - - UPF0061 protein azo1574 [Morus notabilis]
13 Hb_001586_030 0.0870372578 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
14 Hb_000922_250 0.0873026379 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_033799_010 0.0873114396 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
16 Hb_023344_160 0.0874383583 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
17 Hb_000535_050 0.0898290959 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
18 Hb_000125_180 0.0902294879 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
19 Hb_000080_110 0.0911820691 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
20 Hb_004306_120 0.0923991602 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001691_200 Hb_001691_200 Hb_002631_210 Hb_002631_210 Hb_001691_200--Hb_002631_210 Hb_004208_050 Hb_004208_050 Hb_001691_200--Hb_004208_050 Hb_011883_020 Hb_011883_020 Hb_001691_200--Hb_011883_020 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170 Hb_002631_210--Hb_011883_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_005074_020 Hb_005074_020 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030 Hb_000261_480 Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004048_120 Hb_004048_120 Hb_004208_050--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004208_050--Hb_000358_050 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_011883_020--Hb_005074_020 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_004306_120 Hb_004306_120 Hb_002609_080--Hb_004306_120 Hb_011021_050 Hb_011021_050 Hb_002609_080--Hb_011021_050 Hb_001377_100 Hb_001377_100 Hb_002609_080--Hb_001377_100 Hb_003849_280 Hb_003849_280 Hb_002609_080--Hb_003849_280 Hb_002609_080--Hb_005181_050 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250 Hb_000960_080 Hb_000960_080 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000270_170--Hb_000318_150 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.06682 23.5187 15.5953 18.27 9.32898 9.28245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59325 11.0398 16.0828 31.9499 30.4751

CAGE analysis