Hb_000125_180

Information

Type -
Description -
Location Contig125: 216468-232245
Sequence    

Annotation

kegg
ID rcu:RCOM_0454390
description RNA recognition motif-containing protein, putative
nr
ID XP_012065209.1
description PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
swissprot
ID Q8LPQ9
description Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2
trembl
ID A0A067L5Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20896 PE=4 SV=1
Gene Ontology
ID GO:0000166
description flowering time control protein fpa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07608: 216603-216893 , PASA_asmbl_07609: 216603-223880 , PASA_asmbl_07611: 222626-224469 , PASA_asmbl_07612: 224632-232176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_180 0.0 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
2 Hb_005181_050 0.070391414 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
3 Hb_002235_310 0.0763647863 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
4 Hb_000866_110 0.0866862607 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
5 Hb_011925_020 0.089846467 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_001691_200 0.0902294879 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
7 Hb_000080_110 0.0902981181 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
8 Hb_000321_090 0.0945497607 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
9 Hb_000167_120 0.0954605239 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
10 Hb_004586_090 0.0956911641 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
11 Hb_000205_250 0.0978362462 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
12 Hb_033799_010 0.0980179002 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
13 Hb_012325_010 0.0980633476 - - hypothetical protein RCOM_0068670 [Ricinus communis]
14 Hb_001235_130 0.0982345067 - - -
15 Hb_000227_330 0.0984357548 - - Acyl-CoA synthetase [Ricinus communis]
16 Hb_001511_180 0.0986569468 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
17 Hb_004884_090 0.0998750128 - - importin beta-1, putative [Ricinus communis]
18 Hb_003124_270 0.1005124273 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
19 Hb_000649_060 0.1012081917 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
20 Hb_001366_270 0.1025105816 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]

Gene co-expression network

sample Hb_000125_180 Hb_000125_180 Hb_005181_050 Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_002235_310 Hb_002235_310 Hb_000125_180--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000125_180--Hb_000866_110 Hb_011925_020 Hb_011925_020 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250 Hb_002235_310--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_002235_310--Hb_000205_250 Hb_000649_120 Hb_000649_120 Hb_002235_310--Hb_000649_120 Hb_002235_310--Hb_011925_020 Hb_000072_020 Hb_000072_020 Hb_002235_310--Hb_000072_020 Hb_000866_110--Hb_000205_250 Hb_001006_010 Hb_001006_010 Hb_000866_110--Hb_001006_010 Hb_000866_110--Hb_011925_020 Hb_000271_120 Hb_000271_120 Hb_000866_110--Hb_000271_120 Hb_000049_250 Hb_000049_250 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_011925_020--Hb_000271_120 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_011925_020--Hb_005181_050 Hb_002631_210 Hb_002631_210 Hb_001691_200--Hb_002631_210 Hb_004208_050 Hb_004208_050 Hb_001691_200--Hb_004208_050 Hb_011883_020 Hb_011883_020 Hb_001691_200--Hb_011883_020 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170 Hb_000080_110--Hb_000321_090 Hb_000080_110--Hb_005074_020 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000080_110--Hb_000049_250 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10403 4.80258 3.26849 4.91627 1.3277 1.46135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23462 1.41602 2.41576 7.04336 6.27318

CAGE analysis