Hb_000080_110

Information

Type -
Description -
Location Contig80: 75145-83563
Sequence    

Annotation

kegg
ID rcu:RCOM_1203990
description phosphatidylinositol glycan, putative
nr
ID XP_012065238.1
description PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q8TEQ8
description GPI ethanolamine phosphate transferase 3 OS=Homo sapiens GN=PIGO PE=1 SV=3
trembl
ID B9SWD5
description Phosphatidylinositol glycan, putative OS=Ricinus communis GN=RCOM_1203990 PE=4 SV=1
Gene Ontology
ID GO:0003824
description gpi ethanolamine phosphate transferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58726: 75068-77770 , PASA_asmbl_58727: 77474-77576 , PASA_asmbl_58728: 78773-80235 , PASA_asmbl_58729: 80366-80657 , PASA_asmbl_58730: 81539-82085 , PASA_asmbl_58731: 82586-83062 , PASA_asmbl_58732: 83278-83546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_110 0.0 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
2 Hb_000321_090 0.0553828746 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
3 Hb_005074_020 0.0571614462 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
4 Hb_033799_010 0.0659559702 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
5 Hb_000049_250 0.0678425411 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
6 Hb_011925_020 0.0733868942 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_006478_030 0.073687446 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
8 Hb_002027_190 0.0737064595 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
9 Hb_002686_140 0.0745491656 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
10 Hb_002276_040 0.0777535861 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
11 Hb_001511_180 0.0798610134 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
12 Hb_007245_020 0.0848666999 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
13 Hb_009615_160 0.0885740363 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_000890_070 0.089143152 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
15 Hb_002631_210 0.0898341968 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
16 Hb_011883_020 0.0901996419 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_000125_180 0.0902981181 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
18 Hb_005181_050 0.0908399604 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
19 Hb_000009_120 0.0909830906 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
20 Hb_001691_200 0.0911820691 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]

Gene co-expression network

sample Hb_000080_110 Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_005074_020 Hb_005074_020 Hb_000080_110--Hb_005074_020 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000049_250 Hb_000049_250 Hb_000080_110--Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_080147_050 Hb_080147_050 Hb_000321_090--Hb_080147_050 Hb_002027_190 Hb_002027_190 Hb_000321_090--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_000321_090--Hb_020805_180 Hb_000321_090--Hb_000049_250 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_005074_020--Hb_011925_020 Hb_171554_040 Hb_171554_040 Hb_033799_010--Hb_171554_040 Hb_001511_180 Hb_001511_180 Hb_033799_010--Hb_001511_180 Hb_033799_010--Hb_000049_250 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_033799_010--Hb_005074_020 Hb_000049_250--Hb_011925_020 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_000271_120 Hb_000271_120 Hb_011925_020--Hb_000271_120 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050 Hb_160608_010 Hb_160608_010 Hb_006478_030--Hb_160608_010 Hb_006478_030--Hb_007245_020 Hb_002357_070 Hb_002357_070 Hb_006478_030--Hb_002357_070 Hb_000318_150 Hb_000318_150 Hb_006478_030--Hb_000318_150 Hb_000206_160 Hb_000206_160 Hb_006478_030--Hb_000206_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0037 7.88309 4.22348 5.93305 2.88149 2.69071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12785 1.60966 3.39201 8.98256 6.18297

CAGE analysis