Hb_027760_060

Information

Type -
Description -
Location Contig27760: 55933-60865
Sequence    

Annotation

kegg
ID rcu:RCOM_0837270
description nucleic acid binding protein, putative
nr
ID XP_012067671.1
description PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KYG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15628 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28994: 57393-59009 , PASA_asmbl_28995: 56067-59613 , PASA_asmbl_28996: 59900-60404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027760_060 0.0 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
2 Hb_000029_170 0.0625065565 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
3 Hb_005074_020 0.0680205386 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
4 Hb_002317_010 0.0715139727 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
5 Hb_008289_040 0.0814508093 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
6 Hb_001646_020 0.0823308609 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X2 [Jatropha curcas]
7 Hb_002445_030 0.0881534235 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
8 Hb_000101_390 0.0890450414 - - PREDICTED: mucin-5B [Jatropha curcas]
9 Hb_011925_020 0.0904193491 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_002276_040 0.0910003184 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
11 Hb_009615_160 0.0918519802 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
12 Hb_005846_050 0.0927586696 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
13 Hb_016734_020 0.0933348464 - - sugar transporter, putative [Ricinus communis]
14 Hb_000599_360 0.0936079555 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_158845_060 0.0949625048 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
16 Hb_001511_180 0.0953514183 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
17 Hb_001900_100 0.0955197467 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
18 Hb_000318_150 0.0970310214 - - RNA-binding protein Nova-1, putative [Ricinus communis]
19 Hb_001587_030 0.0970633466 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
20 Hb_016734_010 0.0972843388 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_027760_060 Hb_027760_060 Hb_000029_170 Hb_000029_170 Hb_027760_060--Hb_000029_170 Hb_005074_020 Hb_005074_020 Hb_027760_060--Hb_005074_020 Hb_002317_010 Hb_002317_010 Hb_027760_060--Hb_002317_010 Hb_008289_040 Hb_008289_040 Hb_027760_060--Hb_008289_040 Hb_001646_020 Hb_001646_020 Hb_027760_060--Hb_001646_020 Hb_002445_030 Hb_002445_030 Hb_027760_060--Hb_002445_030 Hb_000029_170--Hb_002317_010 Hb_000029_170--Hb_008289_040 Hb_016734_020 Hb_016734_020 Hb_000029_170--Hb_016734_020 Hb_021165_010 Hb_021165_010 Hb_000029_170--Hb_021165_010 Hb_000029_170--Hb_005074_020 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_000080_110 Hb_000080_110 Hb_005074_020--Hb_000080_110 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_002687_180 Hb_002687_180 Hb_002317_010--Hb_002687_180 Hb_000101_390 Hb_000101_390 Hb_002317_010--Hb_000101_390 Hb_000260_400 Hb_000260_400 Hb_002317_010--Hb_000260_400 Hb_052135_020 Hb_052135_020 Hb_002317_010--Hb_052135_020 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_001511_180 Hb_001511_180 Hb_001646_020--Hb_001511_180 Hb_001646_020--Hb_005074_020 Hb_001646_020--Hb_009615_160 Hb_033799_010 Hb_033799_010 Hb_001646_020--Hb_033799_010 Hb_001646_020--Hb_000080_110 Hb_002445_030--Hb_000173_130 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_013726_050 Hb_013726_050 Hb_002445_030--Hb_013726_050 Hb_002445_030--Hb_008289_040 Hb_002552_040 Hb_002552_040 Hb_002445_030--Hb_002552_040 Hb_002445_030--Hb_002687_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79929 15.5021 16.9555 17.6831 5.03679 7.5844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10576 5.1617 8.70113 21.2569 13.0038

CAGE analysis