Hb_000029_170

Information

Type transcription factor
Description TF Family: NAC
Location Contig29: 179336-181178
Sequence    

Annotation

kegg
ID cic:CICLE_v10028618mg
description hypothetical protein
nr
ID XP_012078968.1
description PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
swissprot
ID Q9XIN7
description NAC domain-containing protein 40 OS=Arabidopsis thaliana GN=NTL8 PE=1 SV=1
trembl
ID R4NEV6
description NAC transcription factor 050 OS=Jatropha curcas GN=JCGZ_14878 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 89-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30362: 179443-196697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_170 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
2 Hb_027760_060 0.0625065565 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
3 Hb_002317_010 0.0727622608 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
4 Hb_008289_040 0.0927317324 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
5 Hb_016734_020 0.0943476034 - - sugar transporter, putative [Ricinus communis]
6 Hb_021165_010 0.0957640605 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
7 Hb_005074_020 0.0965664111 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
8 Hb_000101_390 0.0995453668 - - PREDICTED: mucin-5B [Jatropha curcas]
9 Hb_000684_510 0.0998427208 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
10 Hb_000029_190 0.1025691456 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
11 Hb_001646_020 0.1033366772 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X2 [Jatropha curcas]
12 Hb_000297_030 0.1046171836 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
13 Hb_002445_030 0.1048834841 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
14 Hb_003636_080 0.104889591 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
15 Hb_065500_020 0.1050343591 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
16 Hb_005846_050 0.1058875721 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
17 Hb_033312_040 0.1089009287 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
18 Hb_000243_260 0.1093500754 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
19 Hb_009615_160 0.109869453 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
20 Hb_002687_180 0.1102085539 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_000029_170 Hb_000029_170 Hb_027760_060 Hb_027760_060 Hb_000029_170--Hb_027760_060 Hb_002317_010 Hb_002317_010 Hb_000029_170--Hb_002317_010 Hb_008289_040 Hb_008289_040 Hb_000029_170--Hb_008289_040 Hb_016734_020 Hb_016734_020 Hb_000029_170--Hb_016734_020 Hb_021165_010 Hb_021165_010 Hb_000029_170--Hb_021165_010 Hb_005074_020 Hb_005074_020 Hb_000029_170--Hb_005074_020 Hb_027760_060--Hb_005074_020 Hb_027760_060--Hb_002317_010 Hb_027760_060--Hb_008289_040 Hb_001646_020 Hb_001646_020 Hb_027760_060--Hb_001646_020 Hb_002445_030 Hb_002445_030 Hb_027760_060--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_002317_010--Hb_002687_180 Hb_000101_390 Hb_000101_390 Hb_002317_010--Hb_000101_390 Hb_000260_400 Hb_000260_400 Hb_002317_010--Hb_000260_400 Hb_052135_020 Hb_052135_020 Hb_002317_010--Hb_052135_020 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_010872_050 Hb_010872_050 Hb_016734_020--Hb_010872_050 Hb_008206_080 Hb_008206_080 Hb_016734_020--Hb_008206_080 Hb_004096_110 Hb_004096_110 Hb_016734_020--Hb_004096_110 Hb_002596_060 Hb_002596_060 Hb_016734_020--Hb_002596_060 Hb_000979_220 Hb_000979_220 Hb_016734_020--Hb_000979_220 Hb_016734_020--Hb_027760_060 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_021165_010--Hb_016172_030 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_000080_110 Hb_000080_110 Hb_005074_020--Hb_000080_110 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24544 12.6775 16.7962 13.3596 4.63351 9.37957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56067 4.89485 7.69713 16.3969 9.33853

CAGE analysis