Hb_002317_010

Information

Type -
Description -
Location Contig2317: 22835-30411
Sequence    

Annotation

kegg
ID rcu:RCOM_1176970
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID XP_012088404.1
description PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
swissprot
ID P34881
description DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1 PE=1 SV=1
trembl
ID A0A067JN75
description Cytosine-specific methyltransferase OS=Jatropha curcas GN=JCGZ_25885 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna (cytosine-5)-methyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24384: 22482-22611 , PASA_asmbl_24385: 22865-24101 , PASA_asmbl_24389: 25072-25584 , PASA_asmbl_24390: 25976-26241 , PASA_asmbl_24391: 26250-27672 , PASA_asmbl_24392: 27724-30389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002317_010 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
2 Hb_027760_060 0.0715139727 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
3 Hb_000029_170 0.0727622608 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
4 Hb_002687_180 0.076569559 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
5 Hb_000101_390 0.0875892235 - - PREDICTED: mucin-5B [Jatropha curcas]
6 Hb_000260_400 0.0916696502 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
7 Hb_052135_020 0.094591899 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
8 Hb_002445_030 0.0962990227 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
9 Hb_004228_120 0.0968469649 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
10 Hb_008289_040 0.0968548629 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
11 Hb_002552_040 0.0971612525 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
12 Hb_005741_040 0.0975299968 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
13 Hb_005846_050 0.0980086317 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
14 Hb_006468_010 0.0999364178 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
15 Hb_000703_330 0.1008205904 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000297_030 0.1010586496 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
17 Hb_001250_050 0.1026576128 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_016734_020 0.1037993307 - - sugar transporter, putative [Ricinus communis]
19 Hb_000890_160 0.1044350264 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
20 Hb_158845_060 0.1057587786 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002317_010 Hb_002317_010 Hb_027760_060 Hb_027760_060 Hb_002317_010--Hb_027760_060 Hb_000029_170 Hb_000029_170 Hb_002317_010--Hb_000029_170 Hb_002687_180 Hb_002687_180 Hb_002317_010--Hb_002687_180 Hb_000101_390 Hb_000101_390 Hb_002317_010--Hb_000101_390 Hb_000260_400 Hb_000260_400 Hb_002317_010--Hb_000260_400 Hb_052135_020 Hb_052135_020 Hb_002317_010--Hb_052135_020 Hb_027760_060--Hb_000029_170 Hb_005074_020 Hb_005074_020 Hb_027760_060--Hb_005074_020 Hb_008289_040 Hb_008289_040 Hb_027760_060--Hb_008289_040 Hb_001646_020 Hb_001646_020 Hb_027760_060--Hb_001646_020 Hb_002445_030 Hb_002445_030 Hb_027760_060--Hb_002445_030 Hb_000029_170--Hb_008289_040 Hb_016734_020 Hb_016734_020 Hb_000029_170--Hb_016734_020 Hb_021165_010 Hb_021165_010 Hb_000029_170--Hb_021165_010 Hb_000029_170--Hb_005074_020 Hb_001279_190 Hb_001279_190 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_001504_060 Hb_001504_060 Hb_000101_390--Hb_001504_060 Hb_000101_390--Hb_002445_030 Hb_002006_150 Hb_002006_150 Hb_000101_390--Hb_002006_150 Hb_008206_080 Hb_008206_080 Hb_000101_390--Hb_008206_080 Hb_006824_010 Hb_006824_010 Hb_000101_390--Hb_006824_010 Hb_002684_020 Hb_002684_020 Hb_000101_390--Hb_002684_020 Hb_000260_400--Hb_005741_040 Hb_003683_130 Hb_003683_130 Hb_000260_400--Hb_003683_130 Hb_000260_400--Hb_002687_180 Hb_001616_070 Hb_001616_070 Hb_000260_400--Hb_001616_070 Hb_002687_200 Hb_002687_200 Hb_000260_400--Hb_002687_200 Hb_129204_020 Hb_129204_020 Hb_052135_020--Hb_129204_020 Hb_000567_090 Hb_000567_090 Hb_052135_020--Hb_000567_090 Hb_010068_070 Hb_010068_070 Hb_052135_020--Hb_010068_070 Hb_024758_020 Hb_024758_020 Hb_052135_020--Hb_024758_020 Hb_005833_030 Hb_005833_030 Hb_052135_020--Hb_005833_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.613061 1.73491 3.07674 2.77226 0.697303 1.10748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.712136 0.588467 1.06517 2.72833 1.45958

CAGE analysis