Hb_001504_060

Information

Type -
Description -
Location Contig1504: 47200-57071
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05790g
description hypothetical protein
nr
ID XP_012067522.1
description PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
swissprot
ID O22224
description Nuclear pore complex protein NUP93A OS=Arabidopsis thaliana GN=NUP93A PE=1 SV=2
trembl
ID A0A067L413
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27006 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup93a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12640: 47236-56867 , PASA_asmbl_12641: 57982-61053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_060 0.0 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
2 Hb_001117_110 0.079981316 - - PREDICTED: dynamin-2A [Jatropha curcas]
3 Hb_000009_030 0.0804970673 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
4 Hb_000101_390 0.0815118625 - - PREDICTED: mucin-5B [Jatropha curcas]
5 Hb_106890_010 0.0826700585 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
6 Hb_005846_050 0.0828446744 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
7 Hb_160608_010 0.0831491687 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
8 Hb_000406_210 0.0838750117 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
9 Hb_000243_120 0.0847331761 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
10 Hb_003490_060 0.08520544 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
11 Hb_000976_110 0.085989662 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
12 Hb_001507_050 0.0884886185 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_005854_040 0.0887240913 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000027_200 0.0892894262 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
15 Hb_015884_020 0.0911906682 - - PREDICTED: protein PIR [Jatropha curcas]
16 Hb_005694_060 0.0914096545 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
17 Hb_030736_040 0.0918006234 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
18 Hb_000599_360 0.0930280853 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
19 Hb_001159_060 0.0931262896 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
20 Hb_002445_030 0.0933214841 - - hypothetical protein JCGZ_12656 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_060 Hb_001504_060 Hb_001117_110 Hb_001117_110 Hb_001504_060--Hb_001117_110 Hb_000009_030 Hb_000009_030 Hb_001504_060--Hb_000009_030 Hb_000101_390 Hb_000101_390 Hb_001504_060--Hb_000101_390 Hb_106890_010 Hb_106890_010 Hb_001504_060--Hb_106890_010 Hb_005846_050 Hb_005846_050 Hb_001504_060--Hb_005846_050 Hb_160608_010 Hb_160608_010 Hb_001504_060--Hb_160608_010 Hb_005694_060 Hb_005694_060 Hb_001117_110--Hb_005694_060 Hb_030736_040 Hb_030736_040 Hb_001117_110--Hb_030736_040 Hb_015884_020 Hb_015884_020 Hb_001117_110--Hb_015884_020 Hb_116349_120 Hb_116349_120 Hb_001117_110--Hb_116349_120 Hb_001117_110--Hb_106890_010 Hb_000088_260 Hb_000088_260 Hb_001117_110--Hb_000088_260 Hb_000976_110 Hb_000976_110 Hb_000009_030--Hb_000976_110 Hb_005489_040 Hb_005489_040 Hb_000009_030--Hb_005489_040 Hb_000318_150 Hb_000318_150 Hb_000009_030--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000009_030--Hb_000787_200 Hb_000009_030--Hb_160608_010 Hb_001587_030 Hb_001587_030 Hb_000009_030--Hb_001587_030 Hb_002445_030 Hb_002445_030 Hb_000101_390--Hb_002445_030 Hb_002006_150 Hb_002006_150 Hb_000101_390--Hb_002006_150 Hb_008206_080 Hb_008206_080 Hb_000101_390--Hb_008206_080 Hb_006824_010 Hb_006824_010 Hb_000101_390--Hb_006824_010 Hb_002684_020 Hb_002684_020 Hb_000101_390--Hb_002684_020 Hb_003355_010 Hb_003355_010 Hb_106890_010--Hb_003355_010 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_000406_210 Hb_000406_210 Hb_005846_050--Hb_000406_210 Hb_002552_040 Hb_002552_040 Hb_005846_050--Hb_002552_040 Hb_005846_050--Hb_001587_030 Hb_008289_040 Hb_008289_040 Hb_005846_050--Hb_008289_040 Hb_065500_020 Hb_065500_020 Hb_005846_050--Hb_065500_020 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_003661_010 Hb_003661_010 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_001414_010 Hb_001414_010 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_160608_010--Hb_000318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24287 11.847 18.3842 14.312 6.15505 5.36784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99921 4.17702 7.90244 17.7339 20.0697

CAGE analysis