Hb_000009_030

Information

Type -
Description -
Location Contig9: 14844-19678
Sequence    

Annotation

kegg
ID csv:101229371
description splicing factor U2af large subunit B-like
nr
ID XP_012079058.1
description PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
swissprot
ID Q9ZR40
description Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1
trembl
ID A0A067K6F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12252 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor u2af large subunit b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61817: 14844-19587 , PASA_asmbl_61818: 14882-19615 , PASA_asmbl_61819: 14882-19615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_030 0.0 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
2 Hb_000976_110 0.0601895436 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
3 Hb_005489_040 0.0721487533 - - PREDICTED: cullin-1 [Jatropha curcas]
4 Hb_000318_150 0.0753343371 - - RNA-binding protein Nova-1, putative [Ricinus communis]
5 Hb_000787_200 0.0773657453 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_160608_010 0.0774065303 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
7 Hb_001587_030 0.0784981968 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
8 Hb_001221_180 0.079458741 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_000270_170 0.079666485 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
10 Hb_002357_070 0.0800713508 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
11 Hb_011674_040 0.0800976963 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
12 Hb_001504_060 0.0804970673 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
13 Hb_080147_050 0.0827069139 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
14 Hb_012022_060 0.0830295266 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
15 Hb_060980_010 0.0848691028 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
16 Hb_000109_260 0.0851615601 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
17 Hb_163256_010 0.0866782834 - - PREDICTED: phosphoglucomutase, chloroplastic [Jatropha curcas]
18 Hb_000406_210 0.0868320852 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
19 Hb_003683_010 0.0880945647 - - longevity assurance factor, putative [Ricinus communis]
20 Hb_006478_030 0.0891112622 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]

Gene co-expression network

sample Hb_000009_030 Hb_000009_030 Hb_000976_110 Hb_000976_110 Hb_000009_030--Hb_000976_110 Hb_005489_040 Hb_005489_040 Hb_000009_030--Hb_005489_040 Hb_000318_150 Hb_000318_150 Hb_000009_030--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000009_030--Hb_000787_200 Hb_160608_010 Hb_160608_010 Hb_000009_030--Hb_160608_010 Hb_001587_030 Hb_001587_030 Hb_000009_030--Hb_001587_030 Hb_011674_040 Hb_011674_040 Hb_000976_110--Hb_011674_040 Hb_000109_260 Hb_000109_260 Hb_000976_110--Hb_000109_260 Hb_003490_060 Hb_003490_060 Hb_000976_110--Hb_003490_060 Hb_000976_110--Hb_000318_150 Hb_000976_110--Hb_000787_200 Hb_000409_050 Hb_000409_050 Hb_005489_040--Hb_000409_050 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005260_030 Hb_005260_030 Hb_005489_040--Hb_005260_030 Hb_003117_030 Hb_003117_030 Hb_005489_040--Hb_003117_030 Hb_007413_010 Hb_007413_010 Hb_005489_040--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_005489_040--Hb_188281_040 Hb_000960_080 Hb_000960_080 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000270_170 Hb_000270_170 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_000787_200--Hb_011674_040 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000787_200--Hb_000270_170 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_003661_010 Hb_003661_010 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_001414_010 Hb_001414_010 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_160608_010--Hb_000318_150 Hb_001226_130 Hb_001226_130 Hb_001587_030--Hb_001226_130 Hb_000649_060 Hb_000649_060 Hb_001587_030--Hb_000649_060 Hb_065500_020 Hb_065500_020 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_004837_280 Hb_004837_280 Hb_001587_030--Hb_004837_280 Hb_000890_070 Hb_000890_070 Hb_001587_030--Hb_000890_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7842 44.7313 56.6159 42.2863 30.1653 24.8
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7328 16.4717 22.4831 70.0934 66.156

CAGE analysis