Hb_000976_110

Information

Type -
Description -
Location Contig976: 123438-126783
Sequence    

Annotation

kegg
ID rcu:RCOM_1575910
description Ribosomal RNA assembly protein mis3, putative
nr
ID XP_012084608.1
description PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
swissprot
ID O74777
description KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis3 PE=3 SV=1
trembl
ID A0A067JU06
description KRR1 small subunit processome component OS=Jatropha curcas GN=JCGZ_20196 PE=3 SV=1
Gene Ontology
ID GO:0005730
description krr1 small subunit processome component homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64056: 123450-126933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_110 0.0 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
2 Hb_011674_040 0.0542921433 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
3 Hb_000109_260 0.0551393037 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
4 Hb_000009_030 0.0601895436 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
5 Hb_003490_060 0.0630974157 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
6 Hb_000318_150 0.0746444672 - - RNA-binding protein Nova-1, putative [Ricinus communis]
7 Hb_000787_200 0.0771969639 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000172_360 0.077504052 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
9 Hb_000270_170 0.0783552146 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
10 Hb_001507_050 0.0810718167 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_160608_010 0.0827810079 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
12 Hb_000342_050 0.0832433644 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
13 Hb_000027_200 0.0832601618 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
14 Hb_001141_240 0.0844978889 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
15 Hb_000960_080 0.0846299761 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
16 Hb_001159_060 0.0855277863 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
17 Hb_001504_060 0.085989662 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
18 Hb_080147_050 0.0862761331 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
19 Hb_003680_020 0.0881732632 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_005489_040 0.0886380877 - - PREDICTED: cullin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_110 Hb_000976_110 Hb_011674_040 Hb_011674_040 Hb_000976_110--Hb_011674_040 Hb_000109_260 Hb_000109_260 Hb_000976_110--Hb_000109_260 Hb_000009_030 Hb_000009_030 Hb_000976_110--Hb_000009_030 Hb_003490_060 Hb_003490_060 Hb_000976_110--Hb_003490_060 Hb_000318_150 Hb_000318_150 Hb_000976_110--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000976_110--Hb_000787_200 Hb_000270_170 Hb_000270_170 Hb_011674_040--Hb_000270_170 Hb_011674_040--Hb_000787_200 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_011674_040--Hb_000318_150 Hb_000960_080 Hb_000960_080 Hb_011674_040--Hb_000960_080 Hb_000109_260--Hb_003490_060 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_000109_260--Hb_011674_040 Hb_000109_260--Hb_000009_030 Hb_003490_050 Hb_003490_050 Hb_000109_260--Hb_003490_050 Hb_005489_040 Hb_005489_040 Hb_000009_030--Hb_005489_040 Hb_000009_030--Hb_000318_150 Hb_000009_030--Hb_000787_200 Hb_160608_010 Hb_160608_010 Hb_000009_030--Hb_160608_010 Hb_001587_030 Hb_001587_030 Hb_000009_030--Hb_001587_030 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000787_200--Hb_000270_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92139 16.0391 22.6765 17.6322 8.76858 9.23858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.63977 7.38555 5.2091 23.1775 24.9548

CAGE analysis