Hb_003490_050

Information

Type -
Description -
Location Contig3490: 56102-88868
Sequence    

Annotation

kegg
ID rcu:RCOM_1276950
description Cyclic nucleotide-gated ion channel, putative
nr
ID XP_012079190.1
description PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
swissprot
ID Q9LD37
description Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1
trembl
ID A0A067LBF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17403 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36329: 56119-107017 , PASA_asmbl_36330: 56119-107017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003490_050 0.0 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
2 Hb_002232_490 0.0724703333 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
3 Hb_000922_260 0.0818486898 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
4 Hb_003490_060 0.0866377002 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
5 Hb_000109_260 0.0866576689 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
6 Hb_005571_010 0.0887799299 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
7 Hb_001341_010 0.0943800568 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
8 Hb_005854_040 0.0967084435 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002392_020 0.1009407259 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
10 Hb_106890_010 0.1040791622 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
11 Hb_002828_060 0.1046641059 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
12 Hb_005914_040 0.1066244869 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
13 Hb_001998_220 0.1090240464 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
14 Hb_001226_130 0.1094848833 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
15 Hb_021297_020 0.10960289 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
16 Hb_023988_030 0.1097518616 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
17 Hb_000027_200 0.1099706319 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
18 Hb_000984_140 0.1110933863 - - PREDICTED: xylulose kinase [Jatropha curcas]
19 Hb_001366_270 0.1111920253 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
20 Hb_000976_110 0.1112868688 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003490_050 Hb_003490_050 Hb_002232_490 Hb_002232_490 Hb_003490_050--Hb_002232_490 Hb_000922_260 Hb_000922_260 Hb_003490_050--Hb_000922_260 Hb_003490_060 Hb_003490_060 Hb_003490_050--Hb_003490_060 Hb_000109_260 Hb_000109_260 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010 Hb_002392_020 Hb_002392_020 Hb_002232_490--Hb_002392_020 Hb_001226_130 Hb_001226_130 Hb_002232_490--Hb_001226_130 Hb_024570_040 Hb_024570_040 Hb_002232_490--Hb_024570_040 Hb_002232_490--Hb_000109_260 Hb_002232_490--Hb_003490_060 Hb_000668_110 Hb_000668_110 Hb_000922_260--Hb_000668_110 Hb_000256_110 Hb_000256_110 Hb_000922_260--Hb_000256_110 Hb_000922_260--Hb_002232_490 Hb_003549_050 Hb_003549_050 Hb_000922_260--Hb_003549_050 Hb_001405_080 Hb_001405_080 Hb_000922_260--Hb_001405_080 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_003490_060--Hb_002392_020 Hb_003490_060--Hb_000109_260 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_000109_260--Hb_000976_110 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_011674_040 Hb_011674_040 Hb_000109_260--Hb_011674_040 Hb_000009_030 Hb_000009_030 Hb_000109_260--Hb_000009_030 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_002150_020 Hb_002150_020 Hb_005571_010--Hb_002150_020 Hb_005571_010--Hb_106890_010 Hb_005571_010--Hb_003355_010 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040 Hb_055690_010 Hb_055690_010 Hb_005571_010--Hb_055690_010 Hb_005181_050 Hb_005181_050 Hb_001341_010--Hb_005181_050 Hb_000167_120 Hb_000167_120 Hb_001341_010--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001341_010--Hb_000025_500 Hb_001366_270 Hb_001366_270 Hb_001341_010--Hb_001366_270 Hb_000186_080 Hb_000186_080 Hb_001341_010--Hb_000186_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94796 8.65444 10.7651 13.7667 5.06957 6.61759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96194 2.47028 3.59718 16.7458 23.428

CAGE analysis