Hb_000256_110

Information

Type -
Description -
Location Contig256: 174775-186887
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27650g
description POPTRDRAFT_654206; aspartate aminotransferase 2 family protein
nr
ID XP_012076464.1
description PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
swissprot
ID P46248
description Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2
trembl
ID A0A067KBD5
description Aspartate aminotransferase OS=Jatropha curcas GN=JCGZ_07112 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aspartate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26685: 180333-184365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_110 0.0 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
2 Hb_000739_210 0.0865740427 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
3 Hb_014497_060 0.0912409267 - - phosphofructokinase, putative [Ricinus communis]
4 Hb_000922_260 0.0975747834 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
5 Hb_000668_110 0.1150869342 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
6 Hb_003490_050 0.1194372065 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
7 Hb_001405_080 0.1246670199 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
8 Hb_002902_140 0.1298911535 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
9 Hb_002232_490 0.1307488965 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
10 Hb_000896_050 0.1308259948 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
11 Hb_007943_150 0.1343907676 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
12 Hb_002026_070 0.1380130098 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
13 Hb_001584_340 0.1396106904 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
14 Hb_000008_350 0.1432468625 - - -
15 Hb_003549_050 0.1433777216 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
16 Hb_004111_030 0.149190514 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
17 Hb_005571_010 0.1526127299 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
18 Hb_009078_030 0.1539125519 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]
19 Hb_023988_030 0.1544872114 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
20 Hb_098533_010 0.1552070126 - - hypothetical protein L484_003492 [Morus notabilis]

Gene co-expression network

sample Hb_000256_110 Hb_000256_110 Hb_000739_210 Hb_000739_210 Hb_000256_110--Hb_000739_210 Hb_014497_060 Hb_014497_060 Hb_000256_110--Hb_014497_060 Hb_000922_260 Hb_000922_260 Hb_000256_110--Hb_000922_260 Hb_000668_110 Hb_000668_110 Hb_000256_110--Hb_000668_110 Hb_003490_050 Hb_003490_050 Hb_000256_110--Hb_003490_050 Hb_001405_080 Hb_001405_080 Hb_000256_110--Hb_001405_080 Hb_000896_050 Hb_000896_050 Hb_000739_210--Hb_000896_050 Hb_000008_350 Hb_000008_350 Hb_000739_210--Hb_000008_350 Hb_000062_510 Hb_000062_510 Hb_000739_210--Hb_000062_510 Hb_010288_060 Hb_010288_060 Hb_000739_210--Hb_010288_060 Hb_004339_030 Hb_004339_030 Hb_000739_210--Hb_004339_030 Hb_002026_070 Hb_002026_070 Hb_014497_060--Hb_002026_070 Hb_002902_140 Hb_002902_140 Hb_014497_060--Hb_002902_140 Hb_002232_490 Hb_002232_490 Hb_014497_060--Hb_002232_490 Hb_002631_130 Hb_002631_130 Hb_014497_060--Hb_002631_130 Hb_014497_060--Hb_000922_260 Hb_000922_260--Hb_003490_050 Hb_000922_260--Hb_000668_110 Hb_000922_260--Hb_002232_490 Hb_003549_050 Hb_003549_050 Hb_000922_260--Hb_003549_050 Hb_000922_260--Hb_001405_080 Hb_000668_110--Hb_002026_070 Hb_000668_110--Hb_003490_050 Hb_000668_110--Hb_003549_050 Hb_011853_010 Hb_011853_010 Hb_000668_110--Hb_011853_010 Hb_003490_050--Hb_002232_490 Hb_003490_060 Hb_003490_060 Hb_003490_050--Hb_003490_060 Hb_000109_260 Hb_000109_260 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010 Hb_001405_080--Hb_003549_050 Hb_004111_030 Hb_004111_030 Hb_001405_080--Hb_004111_030 Hb_004041_030 Hb_004041_030 Hb_001405_080--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_001405_080--Hb_002150_020 Hb_052946_010 Hb_052946_010 Hb_001405_080--Hb_052946_010 Hb_002811_190 Hb_002811_190 Hb_001405_080--Hb_002811_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29722 2.35499 6.32073 8.22804 2.11899 3.87564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32677 1.61806 1.98322 13.5458 18.8958

CAGE analysis