Hb_000739_210

Information

Type -
Description -
Location Contig739: 182610-185429
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06610g
description POPTRDRAFT_1098009; hypothetical protein
nr
ID XP_012083560.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
swissprot
ID Q9LPC4
description Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1
trembl
ID A0A067K157
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14514 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56294: 183191-184133 , PASA_asmbl_56295: 184211-184562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_210 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
2 Hb_000256_110 0.0865740427 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
3 Hb_000896_050 0.113336742 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
4 Hb_000008_350 0.1197447228 - - -
5 Hb_000062_510 0.120932432 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
6 Hb_010288_060 0.1222260555 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
7 Hb_004339_030 0.1223779883 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
8 Hb_003226_190 0.1263487381 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
9 Hb_003038_160 0.1290675086 - - auxilin, putative [Ricinus communis]
10 Hb_000922_260 0.1294938082 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
11 Hb_004111_030 0.1303356249 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
12 Hb_023988_030 0.1321490249 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
13 Hb_001405_080 0.1326266525 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
14 Hb_001009_260 0.1360047051 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
15 Hb_003490_050 0.1384677672 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
16 Hb_001584_340 0.1395966364 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
17 Hb_001677_220 0.14007906 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
18 Hb_005571_010 0.1404353402 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
19 Hb_008375_010 0.141746417 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
20 Hb_014497_060 0.1422539726 - - phosphofructokinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000739_210 Hb_000739_210 Hb_000256_110 Hb_000256_110 Hb_000739_210--Hb_000256_110 Hb_000896_050 Hb_000896_050 Hb_000739_210--Hb_000896_050 Hb_000008_350 Hb_000008_350 Hb_000739_210--Hb_000008_350 Hb_000062_510 Hb_000062_510 Hb_000739_210--Hb_000062_510 Hb_010288_060 Hb_010288_060 Hb_000739_210--Hb_010288_060 Hb_004339_030 Hb_004339_030 Hb_000739_210--Hb_004339_030 Hb_014497_060 Hb_014497_060 Hb_000256_110--Hb_014497_060 Hb_000922_260 Hb_000922_260 Hb_000256_110--Hb_000922_260 Hb_000668_110 Hb_000668_110 Hb_000256_110--Hb_000668_110 Hb_003490_050 Hb_003490_050 Hb_000256_110--Hb_003490_050 Hb_001405_080 Hb_001405_080 Hb_000256_110--Hb_001405_080 Hb_003159_050 Hb_003159_050 Hb_000896_050--Hb_003159_050 Hb_011537_060 Hb_011537_060 Hb_000896_050--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_000896_050--Hb_007933_040 Hb_000896_050--Hb_000062_510 Hb_007741_120 Hb_007741_120 Hb_000896_050--Hb_007741_120 Hb_001975_150 Hb_001975_150 Hb_000896_050--Hb_001975_150 Hb_001677_220 Hb_001677_220 Hb_000008_350--Hb_001677_220 Hb_008375_010 Hb_008375_010 Hb_000008_350--Hb_008375_010 Hb_000008_350--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_000008_350--Hb_008147_080 Hb_000816_200 Hb_000816_200 Hb_000008_350--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000008_350--Hb_003124_120 Hb_000359_210 Hb_000359_210 Hb_000062_510--Hb_000359_210 Hb_003106_190 Hb_003106_190 Hb_000062_510--Hb_003106_190 Hb_000062_510--Hb_007741_120 Hb_023988_030 Hb_023988_030 Hb_000062_510--Hb_023988_030 Hb_000062_510--Hb_003159_050 Hb_010288_060--Hb_004339_030 Hb_010288_060--Hb_008147_080 Hb_010288_060--Hb_000008_350 Hb_000390_030 Hb_000390_030 Hb_010288_060--Hb_000390_030 Hb_003581_290 Hb_003581_290 Hb_010288_060--Hb_003581_290 Hb_004339_030--Hb_003581_290 Hb_004339_030--Hb_008147_080 Hb_004339_030--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.853253 0.756125 1.51714 2.34093 0.491989 1.23433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1503 0.593844 1.05727 3.01922 6.00134

CAGE analysis