Hb_000062_510

Information

Type -
Description -
Location Contig62: 364437-368060
Sequence    

Annotation

kegg
ID rcu:RCOM_1080980
description NADH-ubiquinone oxidoreductase flavoprotein, putative (EC:1.6.99.3)
nr
ID XP_012085644.1
description PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
swissprot
ID Q9FNN5
description NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1
trembl
ID A0A067K3F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17933 PE=4 SV=1
Gene Ontology
ID GO:0008137
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51478: 364480-368004 , PASA_asmbl_51479: 365093-365316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_510 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
2 Hb_000896_050 0.0904054006 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
3 Hb_000359_210 0.0908222329 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003106_190 0.0954809113 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
5 Hb_007741_120 0.0989015486 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
6 Hb_023988_030 0.1017531419 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
7 Hb_003159_050 0.1025477906 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_003038_160 0.1055941446 - - auxilin, putative [Ricinus communis]
9 Hb_006573_150 0.1080884322 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
10 Hb_000046_540 0.1099952351 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
11 Hb_001195_400 0.1100571084 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
12 Hb_003206_110 0.1122169665 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
13 Hb_001981_040 0.1133027444 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
14 Hb_000300_470 0.1136330263 - - PREDICTED: nucleolin-like [Jatropha curcas]
15 Hb_002078_340 0.1138115252 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
16 Hb_004218_190 0.1139408378 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
17 Hb_007101_080 0.1139632241 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
18 Hb_007933_040 0.1145420907 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
19 Hb_012733_040 0.1155904722 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
20 Hb_000922_030 0.1168780254 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000062_510 Hb_000062_510 Hb_000896_050 Hb_000896_050 Hb_000062_510--Hb_000896_050 Hb_000359_210 Hb_000359_210 Hb_000062_510--Hb_000359_210 Hb_003106_190 Hb_003106_190 Hb_000062_510--Hb_003106_190 Hb_007741_120 Hb_007741_120 Hb_000062_510--Hb_007741_120 Hb_023988_030 Hb_023988_030 Hb_000062_510--Hb_023988_030 Hb_003159_050 Hb_003159_050 Hb_000062_510--Hb_003159_050 Hb_000896_050--Hb_003159_050 Hb_011537_060 Hb_011537_060 Hb_000896_050--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_000896_050--Hb_007933_040 Hb_000896_050--Hb_007741_120 Hb_001975_150 Hb_001975_150 Hb_000896_050--Hb_001975_150 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_001195_400 Hb_001195_400 Hb_000359_210--Hb_001195_400 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_004679_030 Hb_004679_030 Hb_000359_210--Hb_004679_030 Hb_003206_110 Hb_003206_110 Hb_000359_210--Hb_003206_110 Hb_002811_010 Hb_002811_010 Hb_003106_190--Hb_002811_010 Hb_000613_110 Hb_000613_110 Hb_003106_190--Hb_000613_110 Hb_003106_190--Hb_000359_210 Hb_003994_110 Hb_003994_110 Hb_003106_190--Hb_003994_110 Hb_000684_210 Hb_000684_210 Hb_003106_190--Hb_000684_210 Hb_000077_150 Hb_000077_150 Hb_003106_190--Hb_000077_150 Hb_006573_150 Hb_006573_150 Hb_007741_120--Hb_006573_150 Hb_106890_010 Hb_106890_010 Hb_007741_120--Hb_106890_010 Hb_007741_120--Hb_007933_040 Hb_007741_120--Hb_003159_050 Hb_003355_010 Hb_003355_010 Hb_007741_120--Hb_003355_010 Hb_001242_120 Hb_001242_120 Hb_007741_120--Hb_001242_120 Hb_005571_010 Hb_005571_010 Hb_023988_030--Hb_005571_010 Hb_005914_040 Hb_005914_040 Hb_023988_030--Hb_005914_040 Hb_055690_010 Hb_055690_010 Hb_023988_030--Hb_055690_010 Hb_023988_030--Hb_106890_010 Hb_001677_220 Hb_001677_220 Hb_023988_030--Hb_001677_220 Hb_011364_020 Hb_011364_020 Hb_023988_030--Hb_011364_020 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_003159_050--Hb_007933_040 Hb_012733_040 Hb_012733_040 Hb_003159_050--Hb_012733_040 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.5944 27.0915 60.6973 78.023 36.8522 45.0212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.8318 26.6835 42.6547 85.2494 149.625

CAGE analysis