Hb_007933_040

Information

Type -
Description -
Location Contig7933: 57271-63741
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10850g
description POPTRDRAFT_1066636; hypothetical protein
nr
ID XP_012079525.1
description PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
swissprot
ID Q9LXA8
description Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1
trembl
ID A0A067KIS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12621 PE=4 SV=1
Gene Ontology
ID GO:0005774
description probable beta-d-xylosidase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58449: 57577-59541 , PASA_asmbl_58450: 60086-63387 , PASA_asmbl_58451: 60915-61393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007933_040 0.0 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
2 Hb_011537_060 0.0688919602 - - UPF0061 protein azo1574 [Morus notabilis]
3 Hb_003159_050 0.0715181916 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_007741_120 0.0743835443 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
5 Hb_106890_010 0.075801134 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
6 Hb_003340_010 0.0792728198 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
7 Hb_002686_200 0.0798471064 - - glucosidase II beta subunit, putative [Ricinus communis]
8 Hb_001586_030 0.0890837375 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
9 Hb_000896_050 0.0890990225 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
10 Hb_001226_130 0.090105442 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
11 Hb_001975_150 0.0907620466 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
12 Hb_001587_030 0.0913549222 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
13 Hb_006970_020 0.0944266073 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
14 Hb_015884_020 0.0958539666 - - PREDICTED: protein PIR [Jatropha curcas]
15 Hb_001141_240 0.0963367308 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
16 Hb_000270_170 0.09678372 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
17 Hb_000007_060 0.09709351 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
18 Hb_005260_030 0.0972873932 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
19 Hb_001504_060 0.0975411409 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
20 Hb_027402_130 0.0975726885 - - malate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007933_040 Hb_007933_040 Hb_011537_060 Hb_011537_060 Hb_007933_040--Hb_011537_060 Hb_003159_050 Hb_003159_050 Hb_007933_040--Hb_003159_050 Hb_007741_120 Hb_007741_120 Hb_007933_040--Hb_007741_120 Hb_106890_010 Hb_106890_010 Hb_007933_040--Hb_106890_010 Hb_003340_010 Hb_003340_010 Hb_007933_040--Hb_003340_010 Hb_002686_200 Hb_002686_200 Hb_007933_040--Hb_002686_200 Hb_001975_150 Hb_001975_150 Hb_011537_060--Hb_001975_150 Hb_004218_180 Hb_004218_180 Hb_011537_060--Hb_004218_180 Hb_005489_040 Hb_005489_040 Hb_011537_060--Hb_005489_040 Hb_011537_060--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_011537_060--Hb_002874_110 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_012733_040 Hb_012733_040 Hb_003159_050--Hb_012733_040 Hb_003159_050--Hb_007741_120 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_006573_150 Hb_006573_150 Hb_007741_120--Hb_006573_150 Hb_007741_120--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_007741_120--Hb_003355_010 Hb_001242_120 Hb_001242_120 Hb_007741_120--Hb_001242_120 Hb_106890_010--Hb_003355_010 Hb_030736_040 Hb_030736_040 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_000890_070 Hb_000890_070 Hb_003340_010--Hb_000890_070 Hb_003340_010--Hb_002874_110 Hb_003517_070 Hb_003517_070 Hb_003340_010--Hb_003517_070 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_065968_010 Hb_065968_010 Hb_002686_200--Hb_065968_010 Hb_159809_070 Hb_159809_070 Hb_002686_200--Hb_159809_070 Hb_002686_200--Hb_001269_600 Hb_002686_200--Hb_003159_050 Hb_006824_010 Hb_006824_010 Hb_002686_200--Hb_006824_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03387 2.25184 3.60928 4.34526 1.57617 1.54498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47132 1.55658 2.25945 5.34587 5.75135

CAGE analysis