Hb_007741_120

Information

Type -
Description -
Location Contig7741: 87214-91295
Sequence    

Annotation

kegg
ID rcu:RCOM_1610540
description Phosphatidate cytidylyltransferase, putative (EC:2.7.7.41)
nr
ID XP_012083625.1
description PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
swissprot
ID Q94A03
description Phosphatidate cytidylyltransferase 4, chloroplastic OS=Arabidopsis thaliana GN=CDS4 PE=1 SV=1
trembl
ID A0A067K950
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14566 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytidinediphosphate diacylglycerol synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57730: 82650-91238 , PASA_asmbl_57731: 91549-92143
cDNA
(Sanger)
(ID:Location)		 010_G06r.ab1: 91554-92140

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_120 0.0 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
2 Hb_006573_150 0.0579487948 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
3 Hb_106890_010 0.069322379 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_007933_040 0.0743835443 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
5 Hb_003159_050 0.0745658365 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_003355_010 0.078452257 - - Heat shock 70 kDa protein, putative [Ricinus communis]
7 Hb_001242_120 0.087364892 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
8 Hb_012733_040 0.0874121448 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_005260_030 0.0878224579 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
10 Hb_019654_020 0.0892345667 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
11 Hb_000896_050 0.0914295611 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
12 Hb_023988_030 0.0933583597 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
13 Hb_003490_060 0.0943585472 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
14 Hb_011537_060 0.0969838238 - - UPF0061 protein azo1574 [Morus notabilis]
15 Hb_000358_210 0.097265551 - - oligosaccharyl transferase, putative [Ricinus communis]
16 Hb_134849_010 0.0979521315 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_006970_020 0.097972653 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
18 Hb_009524_030 0.0980395072 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
19 Hb_000062_510 0.0989015486 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
20 Hb_002392_020 0.0992086945 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]

Gene co-expression network

sample Hb_007741_120 Hb_007741_120 Hb_006573_150 Hb_006573_150 Hb_007741_120--Hb_006573_150 Hb_106890_010 Hb_106890_010 Hb_007741_120--Hb_106890_010 Hb_007933_040 Hb_007933_040 Hb_007741_120--Hb_007933_040 Hb_003159_050 Hb_003159_050 Hb_007741_120--Hb_003159_050 Hb_003355_010 Hb_003355_010 Hb_007741_120--Hb_003355_010 Hb_001242_120 Hb_001242_120 Hb_007741_120--Hb_001242_120 Hb_012733_040 Hb_012733_040 Hb_006573_150--Hb_012733_040 Hb_006573_150--Hb_003159_050 Hb_007741_110 Hb_007741_110 Hb_006573_150--Hb_007741_110 Hb_000364_050 Hb_000364_050 Hb_006573_150--Hb_000364_050 Hb_012150_030 Hb_012150_030 Hb_006573_150--Hb_012150_030 Hb_106890_010--Hb_003355_010 Hb_030736_040 Hb_030736_040 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_011537_060 Hb_011537_060 Hb_007933_040--Hb_011537_060 Hb_007933_040--Hb_003159_050 Hb_007933_040--Hb_106890_010 Hb_003340_010 Hb_003340_010 Hb_007933_040--Hb_003340_010 Hb_002686_200 Hb_002686_200 Hb_007933_040--Hb_002686_200 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_003159_050--Hb_012733_040 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_003355_010--Hb_030736_040 Hb_003355_010--Hb_005571_010 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_003355_010--Hb_003490_060 Hb_001242_120--Hb_012733_040 Hb_005725_130 Hb_005725_130 Hb_001242_120--Hb_005725_130 Hb_002928_090 Hb_002928_090 Hb_001242_120--Hb_002928_090 Hb_002301_100 Hb_002301_100 Hb_001242_120--Hb_002301_100 Hb_001051_050 Hb_001051_050 Hb_001242_120--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44757 3.30819 9.26374 8.48729 4.09004 3.96762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37111 4.23253 3.5125 10.2012 13.5737

CAGE analysis