Hb_003159_050

Information

Type -
Description -
Location Contig3159: 122439-134314
Sequence    

Annotation

kegg
ID rcu:RCOM_0926260
description 3-hydroxybutyryl-CoA dehydratase, putative (EC:4.2.1.17)
nr
ID XP_012078664.1
description PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q9T0K7
description 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=2 SV=2
trembl
ID A0A067KKH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13239 PE=4 SV=1
Gene Ontology
ID GO:0004300
description 3-hydroxyisobutyryl- hydrolase-like protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33291: 123150-134055 , PASA_asmbl_33292: 122842-134055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003159_050 0.0 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_001269_600 0.0680474648 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_007933_040 0.0715181916 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
4 Hb_012733_040 0.0735073807 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_007741_120 0.0745658365 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
6 Hb_012393_030 0.0745767895 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
7 Hb_009615_060 0.0784788821 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
8 Hb_001195_400 0.0792996217 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
9 Hb_002686_200 0.079782602 - - glucosidase II beta subunit, putative [Ricinus communis]
10 Hb_065968_010 0.0845672965 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
11 Hb_002301_100 0.0847374114 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
12 Hb_000896_050 0.0861617058 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
13 Hb_001493_150 0.0872628106 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
14 Hb_011537_060 0.0873656166 - - UPF0061 protein azo1574 [Morus notabilis]
15 Hb_001975_150 0.0875179287 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
16 Hb_006059_030 0.0882381633 - - glutamate dehydrogenase, putative [Ricinus communis]
17 Hb_001242_120 0.088512935 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
18 Hb_001957_010 0.0885883298 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
19 Hb_000078_140 0.0899323742 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
20 Hb_000185_220 0.0908382597 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]

Gene co-expression network

sample Hb_003159_050 Hb_003159_050 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_007933_040 Hb_007933_040 Hb_003159_050--Hb_007933_040 Hb_012733_040 Hb_012733_040 Hb_003159_050--Hb_012733_040 Hb_007741_120 Hb_007741_120 Hb_003159_050--Hb_007741_120 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_001703_050 Hb_001703_050 Hb_001269_600--Hb_001703_050 Hb_000409_050 Hb_000409_050 Hb_001269_600--Hb_000409_050 Hb_001828_180 Hb_001828_180 Hb_001269_600--Hb_001828_180 Hb_004096_110 Hb_004096_110 Hb_001269_600--Hb_004096_110 Hb_000363_190 Hb_000363_190 Hb_001269_600--Hb_000363_190 Hb_011537_060 Hb_011537_060 Hb_007933_040--Hb_011537_060 Hb_007933_040--Hb_007741_120 Hb_106890_010 Hb_106890_010 Hb_007933_040--Hb_106890_010 Hb_003340_010 Hb_003340_010 Hb_007933_040--Hb_003340_010 Hb_002686_200 Hb_002686_200 Hb_007933_040--Hb_002686_200 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_006573_150 Hb_006573_150 Hb_007741_120--Hb_006573_150 Hb_007741_120--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_007741_120--Hb_003355_010 Hb_007741_120--Hb_001242_120 Hb_006059_030 Hb_006059_030 Hb_012393_030--Hb_006059_030 Hb_000841_050 Hb_000841_050 Hb_012393_030--Hb_000841_050 Hb_012393_030--Hb_001195_400 Hb_001493_150 Hb_001493_150 Hb_012393_030--Hb_001493_150 Hb_005601_040 Hb_005601_040 Hb_012393_030--Hb_005601_040 Hb_009615_060--Hb_001493_150 Hb_000548_070 Hb_000548_070 Hb_009615_060--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_009615_060--Hb_001728_140 Hb_002631_130 Hb_002631_130 Hb_009615_060--Hb_002631_130 Hb_009615_060--Hb_012393_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09079 8.87567 21.7131 25.3424 11.4958 10.0394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1594 11.8248 15.1836 30.0465 32.6309

CAGE analysis