Hb_001728_140

Information

Type -
Description -
Location Contig1728: 143213-152350
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16398: 144041-148319 , PASA_asmbl_16399: 148320-149475
cDNA
(Sanger)
(ID:Location)		 045_J02.ab1: 144041-144386

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_140 0.0 - - -
2 Hb_000548_070 0.0557931299 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
3 Hb_009615_060 0.0675193433 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
4 Hb_001493_150 0.0875745833 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
5 Hb_000251_030 0.091375811 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
6 Hb_001510_020 0.0954619936 - - Diaminopimelate epimerase, putative [Ricinus communis]
7 Hb_002477_290 0.098524664 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
8 Hb_094970_010 0.1085128764 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
9 Hb_003044_080 0.1090669675 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_000535_050 0.1097863211 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
11 Hb_029385_010 0.1115671626 - - CTP synthase family protein [Populus trichocarpa]
12 Hb_012393_030 0.1123898669 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
13 Hb_000841_050 0.1153678256 - - hypothetical protein L484_019972 [Morus notabilis]
14 Hb_000215_360 0.1157281835 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_006059_030 0.117254479 - - glutamate dehydrogenase, putative [Ricinus communis]
16 Hb_006059_010 0.1174862233 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
17 Hb_004880_150 0.1178038393 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
18 Hb_001221_020 0.1179408557 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
19 Hb_001623_190 0.1196374241 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
20 Hb_000465_150 0.120091898 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001728_140 Hb_001728_140 Hb_000548_070 Hb_000548_070 Hb_001728_140--Hb_000548_070 Hb_009615_060 Hb_009615_060 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_000251_030 Hb_000251_030 Hb_001728_140--Hb_000251_030 Hb_001510_020 Hb_001510_020 Hb_001728_140--Hb_001510_020 Hb_002477_290 Hb_002477_290 Hb_001728_140--Hb_002477_290 Hb_000548_070--Hb_009615_060 Hb_003044_080 Hb_003044_080 Hb_000548_070--Hb_003044_080 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000548_070--Hb_000251_030 Hb_009615_060--Hb_001493_150 Hb_003159_050 Hb_003159_050 Hb_009615_060--Hb_003159_050 Hb_002631_130 Hb_002631_130 Hb_009615_060--Hb_002631_130 Hb_012393_030 Hb_012393_030 Hb_009615_060--Hb_012393_030 Hb_002301_100 Hb_002301_100 Hb_001493_150--Hb_002301_100 Hb_001493_150--Hb_012393_030 Hb_001221_020 Hb_001221_020 Hb_001493_150--Hb_001221_020 Hb_005648_010 Hb_005648_010 Hb_001493_150--Hb_005648_010 Hb_021576_010 Hb_021576_010 Hb_001493_150--Hb_021576_010 Hb_000251_030--Hb_002477_290 Hb_007218_120 Hb_007218_120 Hb_000251_030--Hb_007218_120 Hb_003376_180 Hb_003376_180 Hb_000251_030--Hb_003376_180 Hb_006059_010 Hb_006059_010 Hb_000251_030--Hb_006059_010 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_000210_060 Hb_000210_060 Hb_001510_020--Hb_000210_060 Hb_001510_020--Hb_000251_030 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_002477_290--Hb_007218_120 Hb_002477_290--Hb_006059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86681 9.82146 16.2324 21.8482 4.99651 6.77383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.143 15.4698 20.7527 36.9081 27.1199

CAGE analysis