Hb_001510_020

Information

Type -
Description -
Location Contig1510: 63780-68357
Sequence    

Annotation

kegg
ID rcu:RCOM_0294430
description Diaminopimelate epimerase, putative (EC:5.1.1.7)
nr
ID XP_002533003.1
description Diaminopimelate epimerase, putative [Ricinus communis]
swissprot
ID Q9LFG2
description Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1
trembl
ID B9T434
description Diaminopimelate epimerase, putative OS=Ricinus communis GN=RCOM_0294430 PE=3 SV=1
Gene Ontology
ID GO:0005737
description diaminopimelate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12742: 63818-68351 , PASA_asmbl_12743: 67399-67642
cDNA
(Sanger)
(ID:Location)		 041_L03.ab1: 63818-64769

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001510_020 0.0 - - Diaminopimelate epimerase, putative [Ricinus communis]
2 Hb_000548_070 0.0812683871 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
3 Hb_001728_140 0.0954619936 - - -
4 Hb_002477_290 0.0985150617 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
5 Hb_000684_520 0.0999520471 - - glutathione S-transferase L3-like [Jatropha curcas]
6 Hb_000210_060 0.104013331 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
7 Hb_000251_030 0.1046257984 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_001799_060 0.1081596065 - - Rab6 [Hevea brasiliensis]
9 Hb_000723_170 0.1087575857 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
10 Hb_029385_010 0.1120018679 - - CTP synthase family protein [Populus trichocarpa]
11 Hb_009615_060 0.1145996434 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
12 Hb_007590_090 0.1146336015 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
13 Hb_001946_310 0.1156339276 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
14 Hb_100147_010 0.116072372 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
15 Hb_015057_020 0.1166092146 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
16 Hb_000139_340 0.1170962342 - - conserved hypothetical protein [Ricinus communis]
17 Hb_180378_010 0.1205410534 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
18 Hb_001493_150 0.1214280757 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
19 Hb_002486_080 0.1227081582 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
20 Hb_005276_040 0.1230431607 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001510_020 Hb_001510_020 Hb_000548_070 Hb_000548_070 Hb_001510_020--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_001510_020--Hb_001728_140 Hb_002477_290 Hb_002477_290 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_000210_060 Hb_000210_060 Hb_001510_020--Hb_000210_060 Hb_000251_030 Hb_000251_030 Hb_001510_020--Hb_000251_030 Hb_000548_070--Hb_001728_140 Hb_009615_060 Hb_009615_060 Hb_000548_070--Hb_009615_060 Hb_003044_080 Hb_003044_080 Hb_000548_070--Hb_003044_080 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000548_070--Hb_000251_030 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_001728_140--Hb_000251_030 Hb_001728_140--Hb_002477_290 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_168893_020 Hb_168893_020 Hb_000684_520--Hb_168893_020 Hb_010560_050 Hb_010560_050 Hb_000684_520--Hb_010560_050 Hb_004429_090 Hb_004429_090 Hb_000684_520--Hb_004429_090 Hb_000187_040 Hb_000187_040 Hb_000684_520--Hb_000187_040 Hb_000684_520--Hb_000210_060 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_000210_060--Hb_168893_020 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040 Hb_000251_030--Hb_007218_120 Hb_003376_180 Hb_003376_180 Hb_000251_030--Hb_003376_180 Hb_000251_030--Hb_006059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.32293 7.78613 14.927 27.2702 3.09788 4.2294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0052 19.4612 13.5836 33.0416 22.2974

CAGE analysis