Hb_168893_020

Information

Type -
Description -
Location Contig168893: 1256-5012
Sequence    

Annotation

kegg
ID rcu:RCOM_0450660
description zinc finger protein, putative
nr
ID XP_012065021.1
description PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
swissprot
ID Q80TN5
description Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zdhhc17 PE=2 SV=2
trembl
ID B9T5S3
description S-acyltransferase OS=Ricinus communis GN=RCOM_0450660 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable protein s-acyltransferase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15645: 3831-4957 , PASA_asmbl_15646: 1347-3805 , PASA_asmbl_15648: 2857-3913 , PASA_asmbl_15649: 2857-3913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168893_020 0.0 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
2 Hb_006538_090 0.0710724579 - - PREDICTED: IST1 homolog [Jatropha curcas]
3 Hb_000210_060 0.087489064 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
4 Hb_000555_100 0.0894220671 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
5 Hb_001369_250 0.0998304774 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
6 Hb_002477_290 0.1000478525 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
7 Hb_005276_040 0.1023408857 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
8 Hb_000187_040 0.1027854689 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
9 Hb_015057_020 0.1037522121 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
10 Hb_000684_520 0.1040880255 - - glutathione S-transferase L3-like [Jatropha curcas]
11 Hb_001728_040 0.1063418497 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
12 Hb_000167_010 0.1068868108 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004005_020 0.1070851969 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_000665_140 0.1071952448 - - PREDICTED: protein MEMO1 [Jatropha curcas]
15 Hb_001301_110 0.109474003 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
16 Hb_000174_260 0.1097361453 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
17 Hb_006637_030 0.1109506924 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
18 Hb_000076_220 0.111454915 - - thioredoxin domain-containing protein, putative [Ricinus communis]
19 Hb_003058_120 0.1149150275 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
20 Hb_000398_060 0.1174271456 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]

Gene co-expression network

sample Hb_168893_020 Hb_168893_020 Hb_006538_090 Hb_006538_090 Hb_168893_020--Hb_006538_090 Hb_000210_060 Hb_000210_060 Hb_168893_020--Hb_000210_060 Hb_000555_100 Hb_000555_100 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_015057_020 Hb_015057_020 Hb_006538_090--Hb_015057_020 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120 Hb_000210_060--Hb_015057_020 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_000210_060--Hb_005276_040 Hb_005588_060 Hb_005588_060 Hb_000555_100--Hb_005588_060 Hb_007257_060 Hb_007257_060 Hb_000555_100--Hb_007257_060 Hb_000555_100--Hb_001369_250 Hb_000167_010 Hb_000167_010 Hb_000555_100--Hb_000167_010 Hb_000555_100--Hb_003058_120 Hb_002675_140 Hb_002675_140 Hb_001369_250--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_001369_250--Hb_010174_150 Hb_010560_050 Hb_010560_050 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_000174_260 Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0696 1.41488 3.2041 3.1739 0.591734 1.02101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79332 3.38513 1.44051 4.21822 2.15789

CAGE analysis