Hb_000428_060

Information

Type -
Description -
Location Contig428: 108428-121212
Sequence    

Annotation

kegg
ID rcu:RCOM_1520380
description malate dehydrogenase, putative (EC:1.1.1.37)
nr
ID XP_002524262.1
description malate dehydrogenase, putative [Ricinus communis]
swissprot
ID P17783
description Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1
trembl
ID B9SE47
description Malate dehydrogenase OS=Ricinus communis GN=RCOM_1520380 PE=3 SV=1
Gene Ontology
ID GO:0030060
description malate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42076: 111230-121108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000428_060 0.0 - - malate dehydrogenase, putative [Ricinus communis]
2 Hb_003106_100 0.088645667 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
3 Hb_001123_160 0.0891253757 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_005276_040 0.0899764079 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
5 Hb_002876_020 0.0903023327 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
6 Hb_180343_010 0.0953192645 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
7 Hb_002045_060 0.0956244049 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
8 Hb_001019_150 0.0975364961 - - Acyl-protein thioesterase, putative [Ricinus communis]
9 Hb_000032_370 0.0976419219 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
10 Hb_001892_070 0.098580742 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
11 Hb_000649_140 0.0988306084 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
12 Hb_021409_080 0.1006423261 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
13 Hb_010560_050 0.1047111623 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
14 Hb_006538_090 0.1059039741 - - PREDICTED: IST1 homolog [Jatropha curcas]
15 Hb_003360_040 0.1065393266 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
16 Hb_015057_020 0.1075229251 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
17 Hb_000457_290 0.1075443354 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
18 Hb_000771_060 0.1077351171 - - PREDICTED: spermine synthase [Jatropha curcas]
19 Hb_001016_100 0.1077668241 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
20 Hb_004007_110 0.1086164774 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000428_060 Hb_000428_060 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060 Hb_003106_100--Hb_002876_020 Hb_000649_140 Hb_000649_140 Hb_003106_100--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_003106_100--Hb_001019_150 Hb_001353_010 Hb_001353_010 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_003622_040 Hb_003622_040 Hb_001123_160--Hb_003622_040 Hb_003291_020 Hb_003291_020 Hb_001123_160--Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_000174_260 Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_005276_040--Hb_002045_060 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030 Hb_002876_020--Hb_000649_140 Hb_002876_020--Hb_001019_150 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_008147_090 Hb_008147_090 Hb_180343_010--Hb_008147_090 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_000392_340 Hb_000392_340 Hb_180343_010--Hb_000392_340 Hb_021409_080 Hb_021409_080 Hb_180343_010--Hb_021409_080 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110 Hb_002184_090 Hb_002184_090 Hb_180343_010--Hb_002184_090 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3004 26.6239 73.482 114.486 13.7385 19.3198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.1412 117.77 84.0712 81.4675 86.4453

CAGE analysis