Hb_002045_060

Information

Type -
Description -
Location Contig2045: 44126-49662
Sequence    

Annotation

kegg
ID rcu:RCOM_0991600
description NADH-ubiquinone oxidoreductase 24 kD subunit, putative (EC:1.6.5.3)
nr
ID XP_012092116.1
description PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
swissprot
ID O22769
description NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=2 SV=3
trembl
ID A0A067JF27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21844 PE=4 SV=1
Gene Ontology
ID GO:0016491
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21035: 44155-49676
cDNA
(Sanger)
(ID:Location)		 033_G16.ab1: 44170-49261 , 034_J09.ab1: 44172-49349

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_060 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
2 Hb_005276_040 0.0746980964 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
3 Hb_001892_070 0.0895843569 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
4 Hb_004123_020 0.0920996489 - - amino acid binding protein, putative [Ricinus communis]
5 Hb_000032_370 0.0926194326 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
6 Hb_000428_060 0.0956244049 - - malate dehydrogenase, putative [Ricinus communis]
7 Hb_004317_030 0.1052492287 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
8 Hb_002217_100 0.1081476042 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
9 Hb_002392_010 0.1106155135 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
10 Hb_000174_260 0.1115358046 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
11 Hb_001016_100 0.1127853294 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
12 Hb_000510_030 0.1143489807 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
13 Hb_012244_010 0.1152411889 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
14 Hb_007904_230 0.1155784755 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
15 Hb_000392_550 0.1157826495 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001153_120 0.1168846457 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
17 Hb_004257_010 0.1171522025 - - CMP-sialic acid transporter, putative [Ricinus communis]
18 Hb_002110_100 0.1210453165 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_003360_040 0.121626317 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
20 Hb_000684_030 0.1243614923 - - syntaxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002045_060 Hb_002045_060 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_000428_060 Hb_000428_060 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_000174_260 Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_005276_040--Hb_000428_060 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_000403_070 Hb_000403_070 Hb_001892_070--Hb_000403_070 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_000035_480 Hb_000035_480 Hb_001892_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_001892_070--Hb_000457_290 Hb_000189_570 Hb_000189_570 Hb_004123_020--Hb_000189_570 Hb_007904_230 Hb_007904_230 Hb_004123_020--Hb_007904_230 Hb_011609_090 Hb_011609_090 Hb_004123_020--Hb_011609_090 Hb_004123_020--Hb_005276_040 Hb_000364_050 Hb_000364_050 Hb_004123_020--Hb_000364_050 Hb_000032_370--Hb_004317_030 Hb_000392_550 Hb_000392_550 Hb_000032_370--Hb_000392_550 Hb_065525_120 Hb_065525_120 Hb_000032_370--Hb_065525_120 Hb_000510_030 Hb_000510_030 Hb_000032_370--Hb_000510_030 Hb_000032_370--Hb_000428_060 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_004317_030--Hb_000510_030 Hb_004317_030--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83399 3.36013 14.8708 13.1704 2.11278 2.42497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0034 12.7103 13.6423 10.8302 14.7306

CAGE analysis