Hb_001016_100

Information

Type -
Description -
Location Contig1016: 127928-134880
Sequence    

Annotation

kegg
ID pxb:103943733
description V-type proton ATPase subunit E-like
nr
ID XP_009352347.1
description PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
swissprot
ID Q9SWE7
description V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1
trembl
ID B9RCM6
description Vacuolar ATP synthase subunit E, putative OS=Ricinus communis GN=RCOM_1690700 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_100 0.0 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
2 Hb_001892_070 0.0824273848 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
3 Hb_000920_200 0.0916712578 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
4 Hb_003360_040 0.0923916242 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
5 Hb_000140_090 0.0939403154 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
6 Hb_002968_040 0.0947013713 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
7 Hb_000964_030 0.0949567493 - - ADP/ATP carrier 2 [Theobroma cacao]
8 Hb_005653_070 0.0960552001 - - K+ transport growth defect-like protein [Hevea brasiliensis]
9 Hb_007218_120 0.0964041066 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
10 Hb_015057_020 0.0977373648 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
11 Hb_002119_130 0.0992577409 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
12 Hb_000723_230 0.1016452602 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
13 Hb_002060_010 0.1023916575 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
14 Hb_002217_100 0.1026841092 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
15 Hb_000983_030 0.1053322864 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
16 Hb_022318_020 0.1061257064 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
17 Hb_000428_060 0.1077668241 - - malate dehydrogenase, putative [Ricinus communis]
18 Hb_163256_020 0.1089005281 - - fructokinase [Manihot esculenta]
19 Hb_003376_180 0.1089200002 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
20 Hb_000110_120 0.1091818069 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_001016_100 Hb_001016_100 Hb_001892_070 Hb_001892_070 Hb_001016_100--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_001016_100--Hb_000920_200 Hb_003360_040 Hb_003360_040 Hb_001016_100--Hb_003360_040 Hb_000140_090 Hb_000140_090 Hb_001016_100--Hb_000140_090 Hb_002968_040 Hb_002968_040 Hb_001016_100--Hb_002968_040 Hb_000964_030 Hb_000964_030 Hb_001016_100--Hb_000964_030 Hb_000403_070 Hb_000403_070 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_000035_480 Hb_000035_480 Hb_001892_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_001892_070--Hb_000457_290 Hb_001218_030 Hb_001218_030 Hb_000920_200--Hb_001218_030 Hb_002119_130 Hb_002119_130 Hb_000920_200--Hb_002119_130 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_000920_200--Hb_001828_150 Hb_000853_150 Hb_000853_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060 Hb_003360_040--Hb_002119_130 Hb_007218_120 Hb_007218_120 Hb_003360_040--Hb_007218_120 Hb_000454_090 Hb_000454_090 Hb_003360_040--Hb_000454_090 Hb_003360_040--Hb_000920_200 Hb_001019_100 Hb_001019_100 Hb_003360_040--Hb_001019_100 Hb_003360_040--Hb_000140_090 Hb_006740_030 Hb_006740_030 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000140_090--Hb_001541_120 Hb_007533_040 Hb_007533_040 Hb_000140_090--Hb_007533_040 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_005843_140 Hb_005843_140 Hb_002968_040--Hb_005843_140 Hb_000946_090 Hb_000946_090 Hb_002968_040--Hb_000946_090 Hb_012799_170 Hb_012799_170 Hb_002968_040--Hb_012799_170 Hb_044653_040 Hb_044653_040 Hb_002968_040--Hb_044653_040 Hb_003622_030 Hb_003622_030 Hb_002968_040--Hb_003622_030 Hb_006355_040 Hb_006355_040 Hb_002968_040--Hb_006355_040 Hb_005653_070 Hb_005653_070 Hb_000964_030--Hb_005653_070 Hb_038574_010 Hb_038574_010 Hb_000964_030--Hb_038574_010 Hb_000964_030--Hb_002119_130 Hb_000252_100 Hb_000252_100 Hb_000964_030--Hb_000252_100 Hb_000964_030--Hb_007218_120 Hb_053709_050 Hb_053709_050 Hb_000964_030--Hb_053709_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.97002 6.1123 12.0508 14.24 3.49917 2.96925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.40917 16.9423 13.1134 9.9738 9.92321

CAGE analysis