Hb_000457_290

Information

Type -
Description -
Location Contig457: 326084-328290
Sequence    

Annotation

kegg
ID rcu:RCOM_1375740
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_002523768.1
description ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
swissprot
ID Q9FN42
description ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1
trembl
ID B9SCP9
description ATP-dependent Clp protease proteolytic subunit OS=Ricinus communis GN=RCOM_1375740 PE=3 SV=1
Gene Ontology
ID GO:0009535
description atp-dependent clp protease proteolytic subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43485: 326146-328055 , PASA_asmbl_43486: 327004-327126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_290 0.0 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
2 Hb_000465_070 0.0716817347 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
3 Hb_000035_480 0.0820320506 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
4 Hb_140627_010 0.083885305 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000403_070 0.0856609965 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001892_070 0.0909681091 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
7 Hb_002232_060 0.0991539586 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_003106_100 0.1016701618 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
9 Hb_000392_550 0.1023461922 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000377_150 0.1058007925 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
11 Hb_002876_020 0.1067193164 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
12 Hb_000428_060 0.1075443354 - - malate dehydrogenase, putative [Ricinus communis]
13 Hb_019762_050 0.1085779443 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
14 Hb_000072_200 0.108932455 - - PREDICTED: myb-like protein X [Jatropha curcas]
15 Hb_001979_020 0.108991937 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
16 Hb_000649_140 0.1115507836 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
17 Hb_000032_370 0.1137563842 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
18 Hb_005843_140 0.1151225645 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
19 Hb_015183_060 0.11601408 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
20 Hb_004123_020 0.1170241832 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_290 Hb_000457_290 Hb_000465_070 Hb_000465_070 Hb_000457_290--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_000457_290--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_000457_290--Hb_140627_010 Hb_000403_070 Hb_000403_070 Hb_000457_290--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000457_290--Hb_001892_070 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060 Hb_000465_070--Hb_000035_480 Hb_000465_070--Hb_000403_070 Hb_000465_070--Hb_002232_060 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_000035_480--Hb_140627_010 Hb_000035_480--Hb_000403_070 Hb_000035_480--Hb_001892_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_140627_010--Hb_000403_070 Hb_001240_010 Hb_001240_010 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_140627_010--Hb_000392_550 Hb_000403_070--Hb_006846_150 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_000403_070--Hb_001240_010 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_001979_020 Hb_001979_020 Hb_002232_060--Hb_001979_020 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_000072_200 Hb_000072_200 Hb_002232_060--Hb_000072_200 Hb_003020_150 Hb_003020_150 Hb_002232_060--Hb_003020_150 Hb_006198_070 Hb_006198_070 Hb_002232_060--Hb_006198_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3585 11.6973 23.4549 26.9197 5.55079 7.15156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8598 55.2791 32.2053 26.7456 45.405

CAGE analysis