Hb_140627_010

Information

Type -
Description -
Location Contig140627: 6108-8370
Sequence    

Annotation

kegg
ID rcu:RCOM_0278720
description hypothetical protein
nr
ID XP_002530364.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0278720 PE=4 SV=1
Gene Ontology
ID GO:0009505
description dna-directed rna polymerase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11001: 6161-8446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140627_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000035_480 0.0805388596 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
3 Hb_000403_070 0.0808641831 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000457_290 0.083885305 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
5 Hb_001240_010 0.0965180334 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
6 Hb_006846_150 0.0968920076 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000392_550 0.0980413621 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000140_270 0.0986212354 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
9 Hb_000465_070 0.0995474042 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
10 Hb_011689_120 0.104581604 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
11 Hb_003020_260 0.1138347325 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
12 Hb_012022_170 0.1138494392 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
13 Hb_000622_290 0.1156126805 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
14 Hb_027298_010 0.1159347426 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000107_150 0.1168356316 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
16 Hb_000510_030 0.1182679708 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
17 Hb_001892_070 0.1183422479 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
18 Hb_100886_010 0.119106594 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_005843_140 0.119219375 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
20 Hb_019762_050 0.1199202365 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_140627_010 Hb_140627_010 Hb_000035_480 Hb_000035_480 Hb_140627_010--Hb_000035_480 Hb_000403_070 Hb_000403_070 Hb_140627_010--Hb_000403_070 Hb_000457_290 Hb_000457_290 Hb_140627_010--Hb_000457_290 Hb_001240_010 Hb_001240_010 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_000392_550 Hb_000392_550 Hb_140627_010--Hb_000392_550 Hb_000465_070 Hb_000465_070 Hb_000035_480--Hb_000465_070 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000035_480--Hb_000392_550 Hb_000403_070--Hb_006846_150 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_000403_070--Hb_001240_010 Hb_000403_070--Hb_000465_070 Hb_000403_070--Hb_000457_290 Hb_000457_290--Hb_000465_070 Hb_000457_290--Hb_001892_070 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060 Hb_000107_150 Hb_000107_150 Hb_001240_010--Hb_000107_150 Hb_001240_010--Hb_001575_060 Hb_003050_250 Hb_003050_250 Hb_001240_010--Hb_003050_250 Hb_011457_050 Hb_011457_050 Hb_001240_010--Hb_011457_050 Hb_000811_070 Hb_000811_070 Hb_006846_150--Hb_000811_070 Hb_011689_120 Hb_011689_120 Hb_006846_150--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_006846_150--Hb_000487_260 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_001369_790 Hb_001369_790 Hb_000392_550--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70236 3.3025 7.03621 6.11125 2.05383 3.36047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83807 14.8232 7.30798 5.93625 15.6962

CAGE analysis