Hb_011689_120

Information

Type -
Description -
Location Contig11689: 88421-92140
Sequence    

Annotation

kegg
ID rcu:RCOM_0679060
description hypothetical protein
nr
ID XP_012069455.1
description PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
swissprot
ID Q93W28
description Uncharacterized protein At4g15545 OS=Arabidopsis thaliana GN=At4g15545 PE=1 SV=1
trembl
ID A0A067KV11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02054 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ph-response transcription factor pacc rim101 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05242: 88407-92143 , PASA_asmbl_05243: 91134-92143 , PASA_asmbl_05244: 89170-89408
cDNA
(Sanger)
(ID:Location)		 005_L18.ab1: 88407-90675

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_120 0.0 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
2 Hb_006846_150 0.0658990976 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001322_110 0.0871729226 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000403_070 0.0889507286 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002872_050 0.0899133703 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
6 Hb_000811_070 0.0906145895 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
7 Hb_001318_260 0.0922204886 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
8 Hb_000173_250 0.0936620157 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
9 Hb_000487_260 0.1000924531 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
10 Hb_000510_290 0.1013834686 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_012799_170 0.102391267 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
12 Hb_002014_030 0.1024056458 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
13 Hb_140627_010 0.104581604 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001712_020 0.1062317268 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
15 Hb_002540_080 0.1063792281 - - cysteine-type peptidase, putative [Ricinus communis]
16 Hb_001240_010 0.1069445379 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
17 Hb_003747_230 0.1083938104 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
18 Hb_000462_090 0.1097607702 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
19 Hb_000959_350 0.1098952194 - - PREDICTED: uncharacterized protein LOC105636607 [Jatropha curcas]
20 Hb_000853_190 0.1101421828 - - mitochondrial carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011689_120 Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_002872_050 Hb_002872_050 Hb_011689_120--Hb_002872_050 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_001318_260 Hb_001318_260 Hb_011689_120--Hb_001318_260 Hb_006846_150--Hb_000811_070 Hb_006846_150--Hb_000403_070 Hb_000487_260 Hb_000487_260 Hb_006846_150--Hb_000487_260 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_001322_110--Hb_012799_170 Hb_000137_040 Hb_000137_040 Hb_001322_110--Hb_000137_040 Hb_002408_020 Hb_002408_020 Hb_001322_110--Hb_002408_020 Hb_003124_150 Hb_003124_150 Hb_001322_110--Hb_003124_150 Hb_001322_110--Hb_000811_070 Hb_000510_290 Hb_000510_290 Hb_001322_110--Hb_000510_290 Hb_140627_010 Hb_140627_010 Hb_000403_070--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_000403_070--Hb_001240_010 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000457_290 Hb_000457_290 Hb_000403_070--Hb_000457_290 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_002872_050--Hb_001318_260 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_018133_020 Hb_018133_020 Hb_001318_260--Hb_018133_020 Hb_131181_010 Hb_131181_010 Hb_001318_260--Hb_131181_010 Hb_001279_080 Hb_001279_080 Hb_001318_260--Hb_001279_080 Hb_002540_080 Hb_002540_080 Hb_001318_260--Hb_002540_080 Hb_000160_180 Hb_000160_180 Hb_001318_260--Hb_000160_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3942 9.89931 36.6955 19.8032 11.5242 17.6742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.443 48.6888 31.4647 18.6362 53.3749

CAGE analysis