Hb_000160_180

Information

Type -
Description -
Location Contig160: 155220-160379
Sequence    

Annotation

kegg
ID rcu:RCOM_0467230
description methionyl-tRNA formyltransferase, putative (EC:2.1.2.9)
nr
ID XP_002528067.1
description methionyl-tRNA formyltransferase, putative [Ricinus communis]
swissprot
ID Q65JS5
description Methionyl-tRNA formyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) GN=fmt PE=3 SV=1
trembl
ID B9SPZ8
description Methionyl-tRNA formyltransferase, putative OS=Ricinus communis GN=RCOM_0467230 PE=3 SV=1
Gene Ontology
ID GO:0004479
description methionyl-trna mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14320: 151250-154298 , PASA_asmbl_14321: 156228-159790 , PASA_asmbl_14322: 155313-160469 , PASA_asmbl_14323: 155198-156197 , PASA_asmbl_14324: 155332-156199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_180 0.0 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
2 Hb_131181_010 0.0709288071 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
3 Hb_002540_080 0.0857220894 - - cysteine-type peptidase, putative [Ricinus communis]
4 Hb_001318_260 0.0905779505 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
5 Hb_018133_020 0.0950089084 - - transporter, putative [Ricinus communis]
6 Hb_001279_080 0.1024102462 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
7 Hb_026053_020 0.1034605801 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
8 Hb_001073_080 0.1044326291 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
9 Hb_003018_010 0.1062441051 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
10 Hb_011330_020 0.1062815352 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
11 Hb_002872_050 0.113182871 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
12 Hb_000877_080 0.1152277927 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
13 Hb_000431_070 0.1155451148 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
14 Hb_007827_010 0.1161082068 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
15 Hb_001493_050 0.1172346653 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
16 Hb_020805_080 0.1184053965 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
17 Hb_000457_180 0.1193686261 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
18 Hb_000836_470 0.1194130685 - - -
19 Hb_000012_250 0.120045744 - - hypothetical protein L484_019524 [Morus notabilis]
20 Hb_001056_030 0.1203478722 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_180 Hb_000160_180 Hb_131181_010 Hb_131181_010 Hb_000160_180--Hb_131181_010 Hb_002540_080 Hb_002540_080 Hb_000160_180--Hb_002540_080 Hb_001318_260 Hb_001318_260 Hb_000160_180--Hb_001318_260 Hb_018133_020 Hb_018133_020 Hb_000160_180--Hb_018133_020 Hb_001279_080 Hb_001279_080 Hb_000160_180--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_000160_180--Hb_026053_020 Hb_131181_010--Hb_026053_020 Hb_131181_010--Hb_018133_020 Hb_131181_010--Hb_001279_080 Hb_131181_010--Hb_001318_260 Hb_001329_150 Hb_001329_150 Hb_131181_010--Hb_001329_150 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_002540_080--Hb_001318_260 Hb_001318_260--Hb_018133_020 Hb_001318_260--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_001318_260--Hb_002872_050 Hb_018133_020--Hb_026053_020 Hb_018133_020--Hb_001279_080 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_008071_020 Hb_008071_020 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_026053_020--Hb_008071_020 Hb_000996_140 Hb_000996_140 Hb_026053_020--Hb_000996_140 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80226 0.964535 7.15681 3.36361 2.3018 2.82452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53118 10.7009 3.29287 2.48393 4.2422

CAGE analysis