Hb_002872_050

Information

Type -
Description -
Location Contig2872: 58388-62726
Sequence    

Annotation

kegg
ID vvi:100247940
description thioredoxin-like 3-2, chloroplastic
nr
ID XP_012080950.1
description PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
swissprot
ID Q8VZT6
description Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1
trembl
ID A0A067KDY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16149 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29973: 58555-62444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002872_050 0.0 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
2 Hb_007827_010 0.0799844378 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
3 Hb_003050_280 0.0873925456 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
4 Hb_000056_070 0.0877456039 - - -
5 Hb_000107_150 0.0881750285 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
6 Hb_001318_260 0.0885406101 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
7 Hb_011689_120 0.0899133703 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_002540_080 0.0922113758 - - cysteine-type peptidase, putative [Ricinus communis]
9 Hb_000403_070 0.0941469968 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002613_020 0.0963902423 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
11 Hb_000431_070 0.0967669923 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
12 Hb_001329_150 0.0990404232 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
13 Hb_000035_270 0.1054679722 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
14 Hb_004125_040 0.1054872567 - - -
15 Hb_001575_060 0.1076950706 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
16 Hb_001728_060 0.1077155196 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
17 Hb_002609_200 0.1081720091 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_131181_010 0.1082182033 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
19 Hb_021576_030 0.108488441 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
20 Hb_000877_080 0.1092548201 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]

Gene co-expression network

sample Hb_002872_050 Hb_002872_050 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_007827_010--Hb_000107_150 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_000318_160 Hb_000318_160 Hb_003050_280--Hb_000318_160 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003349_080 Hb_003349_080 Hb_003050_280--Hb_003349_080 Hb_000224_140 Hb_000224_140 Hb_003050_280--Hb_000224_140 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170 Hb_001019_150 Hb_001019_150 Hb_000056_070--Hb_001019_150 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_003106_100 Hb_003106_100 Hb_000056_070--Hb_003106_100 Hb_001329_150 Hb_001329_150 Hb_000056_070--Hb_001329_150 Hb_000056_070--Hb_003050_280 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_018133_020 Hb_018133_020 Hb_001318_260--Hb_018133_020 Hb_131181_010 Hb_131181_010 Hb_001318_260--Hb_131181_010 Hb_001318_260--Hb_001279_080 Hb_002540_080 Hb_002540_080 Hb_001318_260--Hb_002540_080 Hb_000160_180 Hb_000160_180 Hb_001318_260--Hb_000160_180 Hb_006846_150 Hb_006846_150 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_011689_120--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79848 1.64277 7.7025 5.44423 2.43497 3.33988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5012 15.332 6.69946 5.83923 10.3704

CAGE analysis