Hb_014720_110

Information

Type -
Description -
Location Contig14720: 139340-142254
Sequence    

Annotation

kegg
ID crb:CARUB_v10026993mg
description hypothetical protein
nr
ID XP_010546010.1
description PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
swissprot
ID Q9FM04
description GDSL esterase/lipase At5g62930 OS=Arabidopsis thaliana GN=At5g62930 PE=2 SV=3
trembl
ID R0GN40
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10026993mg PE=4 SV=1
Gene Ontology
ID GO:0005576
description gdsl esterase lipase at5g62930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11964: 139422-142228
cDNA
(Sanger)
(ID:Location)		 017_O04.ab1: 141958-142228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_110 0.0 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
2 Hb_006573_190 0.0725203672 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
3 Hb_003678_020 0.0775127738 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001828_150 0.0775168425 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
5 Hb_004586_420 0.0776772701 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
6 Hb_000920_200 0.0825751133 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
7 Hb_003622_030 0.0827025591 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
8 Hb_024650_070 0.0832513058 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
9 Hb_000538_120 0.0894079873 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
10 Hb_000566_120 0.0909542937 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
11 Hb_121729_010 0.0912301991 - - DNA binding protein, putative [Ricinus communis]
12 Hb_028396_010 0.0927990133 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
13 Hb_000107_150 0.0931655809 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
14 Hb_000076_220 0.094819699 - - thioredoxin domain-containing protein, putative [Ricinus communis]
15 Hb_000003_230 0.0953252118 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
16 Hb_000329_760 0.0954090991 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
17 Hb_002968_040 0.0957120857 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
18 Hb_007827_010 0.0966807682 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
19 Hb_002014_020 0.0970598193 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
20 Hb_001931_010 0.097781142 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_014720_110 Hb_014720_110 Hb_006573_190 Hb_006573_190 Hb_014720_110--Hb_006573_190 Hb_003678_020 Hb_003678_020 Hb_014720_110--Hb_003678_020 Hb_001828_150 Hb_001828_150 Hb_014720_110--Hb_001828_150 Hb_004586_420 Hb_004586_420 Hb_014720_110--Hb_004586_420 Hb_000920_200 Hb_000920_200 Hb_014720_110--Hb_000920_200 Hb_003622_030 Hb_003622_030 Hb_014720_110--Hb_003622_030 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_006573_190--Hb_004586_420 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_006573_190--Hb_001828_150 Hb_000390_300 Hb_000390_300 Hb_006573_190--Hb_000390_300 Hb_000069_720 Hb_000069_720 Hb_003678_020--Hb_000069_720 Hb_000110_250 Hb_000110_250 Hb_003678_020--Hb_000110_250 Hb_001301_110 Hb_001301_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_189216_020 Hb_189216_020 Hb_003678_020--Hb_189216_020 Hb_001218_030 Hb_001218_030 Hb_001828_150--Hb_001218_030 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_004586_420--Hb_000003_230 Hb_007676_080 Hb_007676_080 Hb_004586_420--Hb_007676_080 Hb_008494_100 Hb_008494_100 Hb_004586_420--Hb_008494_100 Hb_001489_090 Hb_001489_090 Hb_004586_420--Hb_001489_090 Hb_004586_420--Hb_000390_300 Hb_000920_200--Hb_001218_030 Hb_002119_130 Hb_002119_130 Hb_000920_200--Hb_002119_130 Hb_000920_200--Hb_006573_190 Hb_000920_200--Hb_001828_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060 Hb_012799_170 Hb_012799_170 Hb_003622_030--Hb_012799_170 Hb_002540_080 Hb_002540_080 Hb_003622_030--Hb_002540_080 Hb_003622_030--Hb_000566_120 Hb_002968_040 Hb_002968_040 Hb_003622_030--Hb_002968_040 Hb_011457_050 Hb_011457_050 Hb_003622_030--Hb_011457_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60331 2.5516 9.86663 7.74081 4.45418 4.73958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66437 14.2748 7.67471 10.7 8.25619

CAGE analysis