Hb_000110_250

Information

Type -
Description -
Location Contig110: 294805-298171
Sequence    

Annotation

kegg
ID tcc:TCM_011833
description Hop2
nr
ID XP_012082068.1
description PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
swissprot
ID Q9FX64
description Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana GN=HOP2 PE=1 SV=1
trembl
ID A0A067KAV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18311 PE=4 SV=1
Gene Ontology
ID GO:0006261
description homologous-pairing protein 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03062: 295494-295693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_250 0.0 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
2 Hb_000069_720 0.0730806644 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
3 Hb_003678_020 0.0736601175 - - conserved hypothetical protein [Ricinus communis]
4 Hb_189216_020 0.0809347124 - - PREDICTED: translin [Jatropha curcas]
5 Hb_011330_020 0.0818447926 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
6 Hb_007894_060 0.0837811126 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
7 Hb_007827_010 0.0851701009 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
8 Hb_000840_200 0.0875152685 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
9 Hb_001472_100 0.0886300815 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
10 Hb_001189_070 0.0894278368 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
11 Hb_000465_390 0.0916624339 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
12 Hb_007928_030 0.0932142721 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
13 Hb_017987_030 0.0945878225 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
14 Hb_000599_260 0.0965895263 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
15 Hb_000948_160 0.0992235323 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
16 Hb_000419_020 0.1004993172 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001279_080 0.10126095 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
18 Hb_002272_270 0.1014037405 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
19 Hb_002014_030 0.1016507984 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
20 Hb_001386_040 0.1020933337 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]

Gene co-expression network

sample Hb_000110_250 Hb_000110_250 Hb_000069_720 Hb_000069_720 Hb_000110_250--Hb_000069_720 Hb_003678_020 Hb_003678_020 Hb_000110_250--Hb_003678_020 Hb_189216_020 Hb_189216_020 Hb_000110_250--Hb_189216_020 Hb_011330_020 Hb_011330_020 Hb_000110_250--Hb_011330_020 Hb_007894_060 Hb_007894_060 Hb_000110_250--Hb_007894_060 Hb_007827_010 Hb_007827_010 Hb_000110_250--Hb_007827_010 Hb_001301_110 Hb_001301_110 Hb_000069_720--Hb_001301_110 Hb_004157_050 Hb_004157_050 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_000069_720--Hb_003678_020 Hb_000167_010 Hb_000167_010 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_014720_110 Hb_014720_110 Hb_003678_020--Hb_014720_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_003678_020--Hb_189216_020 Hb_189216_020--Hb_000948_160 Hb_002553_060 Hb_002553_060 Hb_189216_020--Hb_002553_060 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_002994_030 Hb_002994_030 Hb_189216_020--Hb_002994_030 Hb_001946_400 Hb_001946_400 Hb_189216_020--Hb_001946_400 Hb_001056_030 Hb_001056_030 Hb_011330_020--Hb_001056_030 Hb_004709_010 Hb_004709_010 Hb_011330_020--Hb_004709_010 Hb_000599_260 Hb_000599_260 Hb_011330_020--Hb_000599_260 Hb_011330_020--Hb_007827_010 Hb_000160_180 Hb_000160_180 Hb_011330_020--Hb_000160_180 Hb_007928_030 Hb_007928_030 Hb_007894_060--Hb_007928_030 Hb_000538_120 Hb_000538_120 Hb_007894_060--Hb_000538_120 Hb_007894_060--Hb_001301_110 Hb_002301_150 Hb_002301_150 Hb_007894_060--Hb_002301_150 Hb_000136_260 Hb_000136_260 Hb_007894_060--Hb_000136_260 Hb_007894_060--Hb_000069_720 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27801 1.02522 2.20992 2.30647 0.846739 1.7835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76058 3.45779 1.03561 1.87593 2.05529

CAGE analysis