Hb_000599_260

Information

Type -
Description -
Location Contig599: 270669-275180
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03720g
description POPTRDRAFT_830068; SNF7 family protein
nr
ID KHN02490.1
description Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
swissprot
ID Q941D5
description Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
trembl
ID A0A0B2NZJ4
description Vacuolar protein sorting-associated protein 2 like 3 OS=Glycine soja GN=glysoja_002514 PE=4 SV=1
Gene Ontology
ID GO:0007034
description vacuolar protein sorting-associated protein 2 homolog 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50486: 270590-275114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_260 0.0 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
2 Hb_001931_010 0.0723687129 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
3 Hb_002307_180 0.0778258424 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
4 Hb_002171_060 0.0793045047 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000505_130 0.0795188063 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
6 Hb_001472_100 0.0797156026 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
7 Hb_012565_070 0.079799412 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
8 Hb_000690_190 0.080716703 - - 40S ribosomal protein S7, putative [Ricinus communis]
9 Hb_161574_020 0.0828354196 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
10 Hb_000976_120 0.0828588306 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
11 Hb_002946_190 0.0830504431 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
12 Hb_000413_240 0.0833570562 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
13 Hb_032202_100 0.0848755744 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_004041_020 0.0858151024 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
15 Hb_000946_090 0.0863185496 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
16 Hb_007878_010 0.0865300606 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
17 Hb_000580_020 0.0871482755 - - unnamed protein product [Vitis vinifera]
18 Hb_003077_020 0.0878815088 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000373_050 0.0879762523 - - PREDICTED: protein WHI3 [Jatropha curcas]
20 Hb_003207_180 0.0909944981 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_260 Hb_000599_260 Hb_001931_010 Hb_001931_010 Hb_000599_260--Hb_001931_010 Hb_002307_180 Hb_002307_180 Hb_000599_260--Hb_002307_180 Hb_002171_060 Hb_002171_060 Hb_000599_260--Hb_002171_060 Hb_000505_130 Hb_000505_130 Hb_000599_260--Hb_000505_130 Hb_001472_100 Hb_001472_100 Hb_000599_260--Hb_001472_100 Hb_012565_070 Hb_012565_070 Hb_000599_260--Hb_012565_070 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_006326_040 Hb_006326_040 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_000690_190 Hb_000690_190 Hb_002307_180--Hb_000690_190 Hb_002307_180--Hb_012565_070 Hb_000270_310 Hb_000270_310 Hb_002307_180--Hb_000270_310 Hb_000270_470 Hb_000270_470 Hb_002307_180--Hb_000270_470 Hb_032202_100 Hb_032202_100 Hb_002307_180--Hb_032202_100 Hb_161574_020 Hb_161574_020 Hb_002171_060--Hb_161574_020 Hb_000261_160 Hb_000261_160 Hb_002171_060--Hb_000261_160 Hb_007878_010 Hb_007878_010 Hb_002171_060--Hb_007878_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090 Hb_000310_020 Hb_000310_020 Hb_000505_130--Hb_000310_020 Hb_000221_190 Hb_000221_190 Hb_000505_130--Hb_000221_190 Hb_044653_040 Hb_044653_040 Hb_000505_130--Hb_044653_040 Hb_003124_150 Hb_003124_150 Hb_000505_130--Hb_003124_150 Hb_000505_130--Hb_006326_040 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.58518 8.46806 24.0409 19.8156 9.77874 13.0245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2307 29.5019 10.936 8.94358 15.0573

CAGE analysis