Hb_000310_020

Information

Type -
Description -
Location Contig310: 23586-26616
Sequence    

Annotation

kegg
ID rcu:RCOM_0250960
description sphingosine-1-phosphate phosphohydrolase, putative
nr
ID KDP25641.1
description hypothetical protein JCGZ_20797 [Jatropha curcas]
swissprot
ID Q9SUW4
description Probable lipid phosphate phosphatase beta OS=Arabidopsis thaliana GN=LPPB PE=2 SV=1
trembl
ID A0A067JNT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20797 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lipid phosphate phosphatase beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32810: 23679-26553 , PASA_asmbl_32811: 24543-24792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_020 0.0 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
2 Hb_000505_130 0.0450225731 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
3 Hb_000221_190 0.0603709571 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
4 Hb_000161_130 0.062211096 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
5 Hb_006615_240 0.0629776848 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
6 Hb_004324_090 0.0631986528 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
7 Hb_003124_150 0.0663297266 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
8 Hb_001931_010 0.0695980409 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
9 Hb_003582_060 0.0698972269 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
10 Hb_158445_010 0.0719336216 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
11 Hb_000928_070 0.0750479194 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
12 Hb_004143_150 0.0755864843 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
13 Hb_000856_010 0.0758035906 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
14 Hb_012022_040 0.0761909065 - - Protein SIS1, putative [Ricinus communis]
15 Hb_044653_040 0.0766377261 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
16 Hb_000580_020 0.0778207337 - - unnamed protein product [Vitis vinifera]
17 Hb_001278_100 0.0778848262 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
18 Hb_000336_150 0.0798319148 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
19 Hb_000390_300 0.0805102885 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
20 Hb_010098_050 0.0806427613 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]

Gene co-expression network

sample Hb_000310_020 Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000310_020--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000310_020--Hb_000221_190 Hb_000161_130 Hb_000161_130 Hb_000310_020--Hb_000161_130 Hb_006615_240 Hb_006615_240 Hb_000310_020--Hb_006615_240 Hb_004324_090 Hb_004324_090 Hb_000310_020--Hb_004324_090 Hb_003124_150 Hb_003124_150 Hb_000310_020--Hb_003124_150 Hb_001931_010 Hb_001931_010 Hb_000505_130--Hb_001931_010 Hb_000505_130--Hb_000221_190 Hb_044653_040 Hb_044653_040 Hb_000505_130--Hb_044653_040 Hb_000505_130--Hb_003124_150 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040 Hb_003582_060 Hb_003582_060 Hb_000221_190--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100 Hb_000161_130--Hb_000505_130 Hb_000161_130--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_000161_130--Hb_017987_050 Hb_000847_060 Hb_000847_060 Hb_000161_130--Hb_000847_060 Hb_000161_130--Hb_004324_090 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_158445_010 Hb_158445_010 Hb_004324_090--Hb_158445_010 Hb_163256_020 Hb_163256_020 Hb_004324_090--Hb_163256_020 Hb_000069_420 Hb_000069_420 Hb_004324_090--Hb_000069_420 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88835 5.87472 7.14631 7.25712 4.06365 5.01744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27046 13.5297 7.11943 5.31594 7.20449

CAGE analysis