Hb_017987_050

Information

Type -
Description -
Location Contig17987: 36229-49409
Sequence    

Annotation

kegg
ID rcu:RCOM_1585330
description branched-chain amino acid aminotransferase, putative (EC:2.6.1.42)
nr
ID XP_012068142.1
description PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9FYA6
description Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1
trembl
ID A0A067LAM9
description Branched-chain-amino-acid aminotransferase OS=Jatropha curcas GN=JCGZ_15972 PE=3 SV=1
Gene Ontology
ID GO:0052654
description branched-chain-amino-acid aminotransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17370: 37462-39083 , PASA_asmbl_17371: 36781-37882 , PASA_asmbl_17372: 43395-48230 , PASA_asmbl_17373: 49295-49879
cDNA
(Sanger)
(ID:Location)		 016_L01.ab1: 49366-49718 , 019_K23.ab1: 49366-49719 , 030_A03.ab1: 49363-49829 , 035_C12.ab1: 49366-49718 , 043_A16.ab1: 49363-49716 , 053_E05.ab1: 49363-49829

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_050 0.0 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
2 Hb_000161_130 0.0817279976 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
3 Hb_000099_150 0.0859045017 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
4 Hb_000327_230 0.0861384058 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_139294_010 0.0930831628 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_004324_090 0.0938932366 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
7 Hb_000310_020 0.0955102421 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
8 Hb_163256_020 0.0976185975 - - fructokinase [Manihot esculenta]
9 Hb_002027_350 0.0995166444 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
10 Hb_001123_060 0.1040847524 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
11 Hb_001691_140 0.1048583967 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
12 Hb_000155_160 0.1049648131 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
13 Hb_000221_190 0.1052951167 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
14 Hb_005116_060 0.1073657171 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
15 Hb_000847_060 0.1075394729 - - hypothetical protein [Jatropha curcas]
16 Hb_003669_020 0.1087517099 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
17 Hb_006256_030 0.1101245857 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
18 Hb_002534_100 0.1106532526 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
19 Hb_000696_290 0.1106838823 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
20 Hb_000001_060 0.1109492165 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_017987_050 Hb_017987_050 Hb_000161_130 Hb_000161_130 Hb_017987_050--Hb_000161_130 Hb_000099_150 Hb_000099_150 Hb_017987_050--Hb_000099_150 Hb_000327_230 Hb_000327_230 Hb_017987_050--Hb_000327_230 Hb_139294_010 Hb_139294_010 Hb_017987_050--Hb_139294_010 Hb_004324_090 Hb_004324_090 Hb_017987_050--Hb_004324_090 Hb_000310_020 Hb_000310_020 Hb_017987_050--Hb_000310_020 Hb_000161_130--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000161_130--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000161_130--Hb_000221_190 Hb_000847_060 Hb_000847_060 Hb_000161_130--Hb_000847_060 Hb_000161_130--Hb_004324_090 Hb_001691_140 Hb_001691_140 Hb_000099_150--Hb_001691_140 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000099_150--Hb_000327_230 Hb_002078_140 Hb_002078_140 Hb_000099_150--Hb_002078_140 Hb_001863_430 Hb_001863_430 Hb_000327_230--Hb_001863_430 Hb_000327_230--Hb_000136_260 Hb_000001_060 Hb_000001_060 Hb_000327_230--Hb_000001_060 Hb_000005_090 Hb_000005_090 Hb_000327_230--Hb_000005_090 Hb_001016_150 Hb_001016_150 Hb_000327_230--Hb_001016_150 Hb_005162_090 Hb_005162_090 Hb_139294_010--Hb_005162_090 Hb_012022_040 Hb_012022_040 Hb_139294_010--Hb_012022_040 Hb_005784_040 Hb_005784_040 Hb_139294_010--Hb_005784_040 Hb_000347_250 Hb_000347_250 Hb_139294_010--Hb_000347_250 Hb_139294_010--Hb_000221_190 Hb_158445_010 Hb_158445_010 Hb_004324_090--Hb_158445_010 Hb_004324_090--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_004324_090--Hb_163256_020 Hb_000069_420 Hb_000069_420 Hb_004324_090--Hb_000069_420 Hb_006615_240 Hb_006615_240 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010 Hb_000310_020--Hb_000505_130 Hb_000310_020--Hb_000221_190 Hb_000310_020--Hb_006615_240 Hb_003124_150 Hb_003124_150 Hb_000310_020--Hb_003124_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39236 9.8239 6.69252 7.96986 4.30326 3.68881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.33722 17.2163 5.42616 5.30054 6.01376

CAGE analysis