Hb_005784_040

Information

Type -
Description -
Location Contig5784: 25129-31271
Sequence    

Annotation

kegg
ID pop:POPTR_0007s03750g
description POPTRDRAFT_562423; hypothetical protein
nr
ID XP_012086078.1
description PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22234 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49736: 25847-26582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_040 0.0 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
2 Hb_002631_280 0.0840822283 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
3 Hb_139294_010 0.0854923129 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000116_450 0.0946728852 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
5 Hb_000003_540 0.0997222034 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
6 Hb_001357_150 0.1009354891 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
7 Hb_001278_100 0.1016689262 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
8 Hb_000384_070 0.1058383786 - - conserved hypothetical protein [Ricinus communis]
9 Hb_013738_020 0.1077760932 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_004607_090 0.1083715968 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
11 Hb_012022_040 0.1086884834 - - Protein SIS1, putative [Ricinus communis]
12 Hb_000705_170 0.1088081866 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
13 Hb_007451_010 0.1126245618 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
14 Hb_000406_080 0.1128745654 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
15 Hb_000220_010 0.1140328584 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
16 Hb_001123_060 0.1145516798 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
17 Hb_003389_040 0.1153321459 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
18 Hb_000522_150 0.1155058061 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
19 Hb_156635_010 0.1156964187 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
20 Hb_002171_060 0.1161383889 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005784_040 Hb_005784_040 Hb_002631_280 Hb_002631_280 Hb_005784_040--Hb_002631_280 Hb_139294_010 Hb_139294_010 Hb_005784_040--Hb_139294_010 Hb_000116_450 Hb_000116_450 Hb_005784_040--Hb_000116_450 Hb_000003_540 Hb_000003_540 Hb_005784_040--Hb_000003_540 Hb_001357_150 Hb_001357_150 Hb_005784_040--Hb_001357_150 Hb_001278_100 Hb_001278_100 Hb_005784_040--Hb_001278_100 Hb_002631_280--Hb_000003_540 Hb_000384_070 Hb_000384_070 Hb_002631_280--Hb_000384_070 Hb_000538_240 Hb_000538_240 Hb_002631_280--Hb_000538_240 Hb_011671_480 Hb_011671_480 Hb_002631_280--Hb_011671_480 Hb_000086_170 Hb_000086_170 Hb_002631_280--Hb_000086_170 Hb_005162_090 Hb_005162_090 Hb_139294_010--Hb_005162_090 Hb_012022_040 Hb_012022_040 Hb_139294_010--Hb_012022_040 Hb_000347_250 Hb_000347_250 Hb_139294_010--Hb_000347_250 Hb_000221_190 Hb_000221_190 Hb_139294_010--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_139294_010--Hb_017987_050 Hb_000340_530 Hb_000340_530 Hb_000116_450--Hb_000340_530 Hb_013738_020 Hb_013738_020 Hb_000116_450--Hb_013738_020 Hb_002374_370 Hb_002374_370 Hb_000116_450--Hb_002374_370 Hb_003938_090 Hb_003938_090 Hb_000116_450--Hb_003938_090 Hb_093458_040 Hb_093458_040 Hb_000116_450--Hb_093458_040 Hb_000258_070 Hb_000258_070 Hb_000116_450--Hb_000258_070 Hb_000670_050 Hb_000670_050 Hb_000003_540--Hb_000670_050 Hb_000245_080 Hb_000245_080 Hb_000003_540--Hb_000245_080 Hb_002344_130 Hb_002344_130 Hb_000003_540--Hb_002344_130 Hb_181385_010 Hb_181385_010 Hb_000003_540--Hb_181385_010 Hb_007451_010 Hb_007451_010 Hb_001357_150--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_001357_150--Hb_000220_010 Hb_005730_120 Hb_005730_120 Hb_001357_150--Hb_005730_120 Hb_001599_040 Hb_001599_040 Hb_001357_150--Hb_001599_040 Hb_001357_150--Hb_013738_020 Hb_172632_120 Hb_172632_120 Hb_001357_150--Hb_172632_120 Hb_001278_100--Hb_012022_040 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_000270_310 Hb_000270_310 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_164010_040 Hb_164010_040 Hb_001278_100--Hb_164010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80118 3.60051 2.07236 6.02136 3.20942 2.92379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38668 6.28425 2.29272 2.06035 2.80246

CAGE analysis