Hb_000245_080

Information

Type transcription factor
Description TF Family: HB
Location Contig245: 92233-100736
Sequence    

Annotation

kegg
ID rcu:RCOM_1491170
description DNA binding protein, putative
nr
ID XP_012069098.1
description PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
swissprot
ID Q9ZU11
description Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1
trembl
ID A0A067KXE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24870 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25539: 92287-100710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_080 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
2 Hb_000003_540 0.1212746637 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
3 Hb_024879_010 0.1265022452 - - unknown [Glycine max]
4 Hb_005539_310 0.1319951168 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
5 Hb_006065_050 0.134943025 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
6 Hb_000359_140 0.1401051777 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
7 Hb_001217_040 0.1424934819 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
8 Hb_000260_600 0.1428810288 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002344_130 0.1447059341 - - PREDICTED: copper transporter 5 [Jatropha curcas]
10 Hb_002631_280 0.1456448908 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
11 Hb_000429_050 0.1457054759 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
12 Hb_074715_010 0.146219993 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
13 Hb_002983_080 0.1486583473 - - acetylornithine aminotransferase, partial [Prunus persica]
14 Hb_000991_040 0.148829705 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
15 Hb_005694_010 0.1500585632 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
16 Hb_001829_040 0.1503004916 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
17 Hb_000022_050 0.1506301371 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
18 Hb_000009_400 0.156351733 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
19 Hb_004480_020 0.1576335086 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
20 Hb_000445_470 0.157668367 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000245_080 Hb_000245_080 Hb_000003_540 Hb_000003_540 Hb_000245_080--Hb_000003_540 Hb_024879_010 Hb_024879_010 Hb_000245_080--Hb_024879_010 Hb_005539_310 Hb_005539_310 Hb_000245_080--Hb_005539_310 Hb_006065_050 Hb_006065_050 Hb_000245_080--Hb_006065_050 Hb_000359_140 Hb_000359_140 Hb_000245_080--Hb_000359_140 Hb_001217_040 Hb_001217_040 Hb_000245_080--Hb_001217_040 Hb_005784_040 Hb_005784_040 Hb_000003_540--Hb_005784_040 Hb_002631_280 Hb_002631_280 Hb_000003_540--Hb_002631_280 Hb_000670_050 Hb_000670_050 Hb_000003_540--Hb_000670_050 Hb_002344_130 Hb_002344_130 Hb_000003_540--Hb_002344_130 Hb_181385_010 Hb_181385_010 Hb_000003_540--Hb_181385_010 Hb_074715_010 Hb_074715_010 Hb_024879_010--Hb_074715_010 Hb_001146_020 Hb_001146_020 Hb_024879_010--Hb_001146_020 Hb_003910_010 Hb_003910_010 Hb_024879_010--Hb_003910_010 Hb_000343_140 Hb_000343_140 Hb_024879_010--Hb_000343_140 Hb_004450_050 Hb_004450_050 Hb_024879_010--Hb_004450_050 Hb_005539_310--Hb_001217_040 Hb_004987_020 Hb_004987_020 Hb_005539_310--Hb_004987_020 Hb_118507_010 Hb_118507_010 Hb_005539_310--Hb_118507_010 Hb_000991_040 Hb_000991_040 Hb_005539_310--Hb_000991_040 Hb_063716_090 Hb_063716_090 Hb_005539_310--Hb_063716_090 Hb_000260_600 Hb_000260_600 Hb_005539_310--Hb_000260_600 Hb_002837_060 Hb_002837_060 Hb_006065_050--Hb_002837_060 Hb_001016_050 Hb_001016_050 Hb_006065_050--Hb_001016_050 Hb_010697_040 Hb_010697_040 Hb_006065_050--Hb_010697_040 Hb_011609_140 Hb_011609_140 Hb_006065_050--Hb_011609_140 Hb_005000_320 Hb_005000_320 Hb_006065_050--Hb_005000_320 Hb_004109_230 Hb_004109_230 Hb_006065_050--Hb_004109_230 Hb_027760_070 Hb_027760_070 Hb_000359_140--Hb_027760_070 Hb_001135_140 Hb_001135_140 Hb_000359_140--Hb_001135_140 Hb_000359_140--Hb_074715_010 Hb_000359_140--Hb_000260_600 Hb_000457_140 Hb_000457_140 Hb_000359_140--Hb_000457_140 Hb_000140_350 Hb_000140_350 Hb_000359_140--Hb_000140_350 Hb_001217_040--Hb_000260_600 Hb_001217_040--Hb_000359_140 Hb_000984_310 Hb_000984_310 Hb_001217_040--Hb_000984_310 Hb_000890_230 Hb_000890_230 Hb_001217_040--Hb_000890_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9572 18.4537 7.22817 37.3447 10.843 10.5368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2764 13.0527 4.20015 7.14699 6.28495

CAGE analysis