Hb_001135_140

Information

Type -
Description -
Location Contig1135: 182471-185522
Sequence    

Annotation

kegg
ID mdm:103406291
description serine/threonine-protein kinase PBS1-like
nr
ID XP_008343514.1
description PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
swissprot
ID -
description -
trembl
ID K7W1P0
description Uncharacterized protein OS=Zea mays GN=LOC100382129 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04045: 165810-185536 , PASA_asmbl_04046: 166987-185536
cDNA
(Sanger)
(ID:Location)		 026_C13.ab1: 167376-185532

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_140 0.0 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
2 Hb_005023_030 0.0990507184 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
3 Hb_002110_040 0.1056928396 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
4 Hb_115107_010 0.1178018319 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
5 Hb_000359_140 0.1208409763 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
6 Hb_002067_120 0.1220818126 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
7 Hb_001018_130 0.1246008435 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
8 Hb_076875_020 0.1248232984 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_002445_120 0.1256309966 - - secretory carrier membrane protein, putative [Ricinus communis]
10 Hb_000107_200 0.1262305679 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
11 Hb_005170_040 0.1294696783 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
12 Hb_026228_020 0.1295622244 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
13 Hb_000009_240 0.1315051765 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
14 Hb_000676_080 0.1318672228 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
15 Hb_000035_200 0.1329629535 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
16 Hb_010565_010 0.1348562888 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
17 Hb_005269_040 0.1366535742 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
18 Hb_129672_010 0.1372678432 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
19 Hb_001386_140 0.1373050639 - - PREDICTED: B2 protein [Jatropha curcas]
20 Hb_001018_110 0.1379181534 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001135_140 Hb_001135_140 Hb_005023_030 Hb_005023_030 Hb_001135_140--Hb_005023_030 Hb_002110_040 Hb_002110_040 Hb_001135_140--Hb_002110_040 Hb_115107_010 Hb_115107_010 Hb_001135_140--Hb_115107_010 Hb_000359_140 Hb_000359_140 Hb_001135_140--Hb_000359_140 Hb_002067_120 Hb_002067_120 Hb_001135_140--Hb_002067_120 Hb_001018_130 Hb_001018_130 Hb_001135_140--Hb_001018_130 Hb_000107_200 Hb_000107_200 Hb_005023_030--Hb_000107_200 Hb_001386_140 Hb_001386_140 Hb_005023_030--Hb_001386_140 Hb_005023_030--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_005023_030--Hb_010565_010 Hb_026228_020 Hb_026228_020 Hb_005023_030--Hb_026228_020 Hb_002110_040--Hb_115107_010 Hb_003633_040 Hb_003633_040 Hb_002110_040--Hb_003633_040 Hb_002110_040--Hb_000359_140 Hb_000109_170 Hb_000109_170 Hb_002110_040--Hb_000109_170 Hb_009529_040 Hb_009529_040 Hb_002110_040--Hb_009529_040 Hb_115107_010--Hb_009529_040 Hb_115477_010 Hb_115477_010 Hb_115107_010--Hb_115477_010 Hb_007026_040 Hb_007026_040 Hb_115107_010--Hb_007026_040 Hb_168973_010 Hb_168973_010 Hb_115107_010--Hb_168973_010 Hb_027760_070 Hb_027760_070 Hb_000359_140--Hb_027760_070 Hb_074715_010 Hb_074715_010 Hb_000359_140--Hb_074715_010 Hb_000260_600 Hb_000260_600 Hb_000359_140--Hb_000260_600 Hb_000457_140 Hb_000457_140 Hb_000359_140--Hb_000457_140 Hb_000140_350 Hb_000140_350 Hb_000359_140--Hb_000140_350 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_002067_120--Hb_010565_010 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_002067_120--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_002067_120--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_002067_120--Hb_000606_080 Hb_005023_010 Hb_005023_010 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_001018_130--Hb_000107_200 Hb_000146_050 Hb_000146_050 Hb_001018_130--Hb_000146_050 Hb_001018_110 Hb_001018_110 Hb_001018_130--Hb_001018_110 Hb_002445_120 Hb_002445_120 Hb_001018_130--Hb_002445_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.30803 5.78412 3.77951 17.3368 5.89259 16.138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.58389 6.27652 6.92485 5.58084 2.444

CAGE analysis