Hb_002445_120

Information

Type -
Description -
Location Contig2445: 206248-217445
Sequence    

Annotation

kegg
ID rcu:RCOM_1316950
description secretory carrier membrane protein, putative
nr
ID XP_002519001.1
description secretory carrier membrane protein, putative [Ricinus communis]
swissprot
ID Q9C6X2
description Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1
trembl
ID B9RZ32
description Secretory carrier membrane protein, putative OS=Ricinus communis GN=RCOM_1316950 PE=4 SV=1
Gene Ontology
ID GO:0016021
description secretory carrier-associated membrane protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25509: 206274-218222 , PASA_asmbl_25510: 206270-218222 , PASA_asmbl_25512: 209841-210402 , PASA_asmbl_25513: 216646-216953
cDNA
(Sanger)
(ID:Location)		 005_I09.ab1: 206270-208823 , 009_E20.ab1: 206274-215617 , 014_O08.ab1: 206274-215413

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002445_120 0.0 - - secretory carrier membrane protein, putative [Ricinus communis]
2 Hb_003777_310 0.0517971744 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000318_290 0.0676832673 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
4 Hb_000056_260 0.0734818793 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
5 Hb_001633_130 0.0797677574 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
6 Hb_044736_010 0.0811652388 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000107_200 0.0819977469 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
8 Hb_005170_040 0.0826886125 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
9 Hb_000019_030 0.0828893856 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
10 Hb_001018_130 0.0829883775 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
11 Hb_000146_050 0.0840589127 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
12 Hb_022833_100 0.0860757594 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
13 Hb_001454_130 0.08645673 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
14 Hb_000159_090 0.087485192 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
15 Hb_004127_030 0.088013084 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
16 Hb_008120_010 0.0895278814 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
17 Hb_000205_300 0.0905361081 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
18 Hb_054865_150 0.0915659893 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
19 Hb_000120_670 0.0917851242 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
20 Hb_000808_280 0.0918206857 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002445_120 Hb_002445_120 Hb_003777_310 Hb_003777_310 Hb_002445_120--Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_002445_120--Hb_000318_290 Hb_000056_260 Hb_000056_260 Hb_002445_120--Hb_000056_260 Hb_001633_130 Hb_001633_130 Hb_002445_120--Hb_001633_130 Hb_044736_010 Hb_044736_010 Hb_002445_120--Hb_044736_010 Hb_000107_200 Hb_000107_200 Hb_002445_120--Hb_000107_200 Hb_003777_310--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_023001_060 Hb_023001_060 Hb_003777_310--Hb_023001_060 Hb_000608_320 Hb_000608_320 Hb_003777_310--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_003777_310--Hb_004032_150 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000318_290--Hb_000608_320 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_001279_150 Hb_001279_150 Hb_000056_260--Hb_001279_150 Hb_000056_260--Hb_000120_670 Hb_001935_130 Hb_001935_130 Hb_000056_260--Hb_001935_130 Hb_007017_030 Hb_007017_030 Hb_000056_260--Hb_007017_030 Hb_143398_010 Hb_143398_010 Hb_000056_260--Hb_143398_010 Hb_082821_010 Hb_082821_010 Hb_001633_130--Hb_082821_010 Hb_090051_030 Hb_090051_030 Hb_001633_130--Hb_090051_030 Hb_000146_050 Hb_000146_050 Hb_001633_130--Hb_000146_050 Hb_006455_120 Hb_006455_120 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_003177_030 Hb_003177_030 Hb_001633_130--Hb_003177_030 Hb_050454_010 Hb_050454_010 Hb_044736_010--Hb_050454_010 Hb_001018_110 Hb_001018_110 Hb_044736_010--Hb_001018_110 Hb_022833_100 Hb_022833_100 Hb_044736_010--Hb_022833_100 Hb_001018_130 Hb_001018_130 Hb_044736_010--Hb_001018_130 Hb_012322_010 Hb_012322_010 Hb_044736_010--Hb_012322_010 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002067_120 Hb_002067_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7364 10.8541 14.0413 36.7336 22.7719 41.1411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4033 21.0511 26.6284 20.6108 14.9358

CAGE analysis