Hb_044736_010

Information

Type -
Description -
Location Contig44736: 1-936
Sequence    

Annotation

kegg
ID rcu:RCOM_0197040
description ubiquitin-protein ligase, putative
nr
ID XP_002533598.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9LFV5
description F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1
trembl
ID B9T5S9
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0197040 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box kelch-repeat protein at5g15710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044736_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_050454_010 0.0623485169 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
3 Hb_002445_120 0.0811652388 - - secretory carrier membrane protein, putative [Ricinus communis]
4 Hb_001018_110 0.0830193733 - - unnamed protein product [Coffea canephora]
5 Hb_022833_100 0.0844887324 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
6 Hb_001018_130 0.0913336474 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
7 Hb_012322_010 0.0914474418 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_000665_060 0.0919612059 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
9 Hb_000192_080 0.0931814046 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
10 Hb_000116_270 0.093211329 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
11 Hb_000172_290 0.0942804981 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
12 Hb_001159_130 0.0950358474 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
13 Hb_005023_010 0.0962098186 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
14 Hb_000083_250 0.0974486894 - - ring finger protein, putative [Ricinus communis]
15 Hb_001633_130 0.0976091266 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
16 Hb_001766_080 0.0988730241 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
17 Hb_000749_220 0.0993561356 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
18 Hb_004672_040 0.0994651686 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
19 Hb_000318_290 0.0996678902 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
20 Hb_005269_040 0.0999832813 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]

Gene co-expression network

sample Hb_044736_010 Hb_044736_010 Hb_050454_010 Hb_050454_010 Hb_044736_010--Hb_050454_010 Hb_002445_120 Hb_002445_120 Hb_044736_010--Hb_002445_120 Hb_001018_110 Hb_001018_110 Hb_044736_010--Hb_001018_110 Hb_022833_100 Hb_022833_100 Hb_044736_010--Hb_022833_100 Hb_001018_130 Hb_001018_130 Hb_044736_010--Hb_001018_130 Hb_012322_010 Hb_012322_010 Hb_044736_010--Hb_012322_010 Hb_000483_220 Hb_000483_220 Hb_050454_010--Hb_000483_220 Hb_001766_080 Hb_001766_080 Hb_050454_010--Hb_001766_080 Hb_001377_270 Hb_001377_270 Hb_050454_010--Hb_001377_270 Hb_050454_010--Hb_001018_110 Hb_005269_040 Hb_005269_040 Hb_050454_010--Hb_005269_040 Hb_003777_310 Hb_003777_310 Hb_002445_120--Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_002445_120--Hb_000318_290 Hb_000056_260 Hb_000056_260 Hb_002445_120--Hb_000056_260 Hb_001633_130 Hb_001633_130 Hb_002445_120--Hb_001633_130 Hb_000107_200 Hb_000107_200 Hb_002445_120--Hb_000107_200 Hb_000300_630 Hb_000300_630 Hb_001018_110--Hb_000300_630 Hb_005023_010 Hb_005023_010 Hb_001018_110--Hb_005023_010 Hb_001018_110--Hb_001018_130 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_000172_290 Hb_000172_290 Hb_022833_100--Hb_000172_290 Hb_018292_010 Hb_018292_010 Hb_022833_100--Hb_018292_010 Hb_002289_080 Hb_002289_080 Hb_022833_100--Hb_002289_080 Hb_022833_100--Hb_002445_120 Hb_022833_100--Hb_003777_310 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_001018_130--Hb_000107_200 Hb_000146_050 Hb_000146_050 Hb_001018_130--Hb_000146_050 Hb_001018_130--Hb_002445_120 Hb_000192_080 Hb_000192_080 Hb_012322_010--Hb_000192_080 Hb_187953_010 Hb_187953_010 Hb_012322_010--Hb_187953_010 Hb_007638_030 Hb_007638_030 Hb_012322_010--Hb_007638_030 Hb_000212_380 Hb_000212_380 Hb_012322_010--Hb_000212_380 Hb_000429_150 Hb_000429_150 Hb_012322_010--Hb_000429_150 Hb_000140_280 Hb_000140_280 Hb_012322_010--Hb_000140_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60834 3.55485 2.86258 11.0279 4.34263 9.21478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.5616 5.54315 8.64879 5.47764 5.02472

CAGE analysis