Hb_001018_110

Information

Type -
Description -
Location Contig1018: 112276-113239
Sequence    

Annotation

kegg
ID sot:102589985
description uncharacterized LOC102589985
nr
ID CDP16168.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068V8B8
description Coffea canephora DH200=94 genomic scaffold, scaffold_118 OS=Coffea canephora GN=GSCOC_T00017253001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00885: 111890-128271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001018_110 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000300_630 0.0763491738 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
3 Hb_005023_010 0.0767424236 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
4 Hb_001018_130 0.0796656794 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
5 Hb_044736_010 0.0830193733 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_003994_280 0.0844580025 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
7 Hb_072922_010 0.0986991346 - - apolipoprotein d, putative [Ricinus communis]
8 Hb_050454_010 0.098801997 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
9 Hb_000370_020 0.1034870016 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000146_040 0.1035117337 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
11 Hb_001640_030 0.103651415 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
12 Hb_012322_010 0.1038246094 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_090051_030 0.1039332772 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_001024_020 0.1057896174 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
15 Hb_000208_280 0.1086274732 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
16 Hb_000107_080 0.108801667 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
17 Hb_027380_220 0.1093231204 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
18 Hb_000933_060 0.1117976617 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002445_120 0.1126762201 - - secretory carrier membrane protein, putative [Ricinus communis]
20 Hb_002631_070 0.1128115315 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]

Gene co-expression network

sample Hb_001018_110 Hb_001018_110 Hb_000300_630 Hb_000300_630 Hb_001018_110--Hb_000300_630 Hb_005023_010 Hb_005023_010 Hb_001018_110--Hb_005023_010 Hb_001018_130 Hb_001018_130 Hb_001018_110--Hb_001018_130 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_006618_120 Hb_006618_120 Hb_000300_630--Hb_006618_120 Hb_004627_040 Hb_004627_040 Hb_000300_630--Hb_004627_040 Hb_000300_630--Hb_005023_010 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_000300_630--Hb_001633_130 Hb_090051_030 Hb_090051_030 Hb_005023_010--Hb_090051_030 Hb_005023_010--Hb_001018_130 Hb_005023_010--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_005023_010--Hb_000146_050 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_000107_200 Hb_000107_200 Hb_001018_130--Hb_000107_200 Hb_001018_130--Hb_000146_050 Hb_002445_120 Hb_002445_120 Hb_001018_130--Hb_002445_120 Hb_050454_010 Hb_050454_010 Hb_044736_010--Hb_050454_010 Hb_044736_010--Hb_002445_120 Hb_022833_100 Hb_022833_100 Hb_044736_010--Hb_022833_100 Hb_044736_010--Hb_001018_130 Hb_012322_010 Hb_012322_010 Hb_044736_010--Hb_012322_010 Hb_001640_030 Hb_001640_030 Hb_003994_280--Hb_001640_030 Hb_002631_070 Hb_002631_070 Hb_003994_280--Hb_002631_070 Hb_000213_010 Hb_000213_010 Hb_003994_280--Hb_000213_010 Hb_000048_060 Hb_000048_060 Hb_003994_280--Hb_000048_060 Hb_003994_280--Hb_090051_030 Hb_072922_010--Hb_000300_630 Hb_002304_040 Hb_002304_040 Hb_072922_010--Hb_002304_040 Hb_072922_010--Hb_005023_010 Hb_004129_140 Hb_004129_140 Hb_072922_010--Hb_004129_140 Hb_000146_040 Hb_000146_040 Hb_072922_010--Hb_000146_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.862 15.049 10.2669 52.8899 22.9903 34.4254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3143 20.0557 28.1821 16.8615 23.4081

CAGE analysis