Hb_002631_070

Information

Type -
Description -
Location Contig2631: 52556-64999
Sequence    

Annotation

kegg
ID rcu:RCOM_1574020
description hypothetical protein
nr
ID XP_012087342.1
description PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
swissprot
ID Q9FZ45
description Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1
trembl
ID A0A067JQD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22593 PE=4 SV=1
Gene Ontology
ID GO:0008233
description uncharacterized membrane protein at1g16860-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27451: 52925-58803 , PASA_asmbl_27452: 52986-58803 , PASA_asmbl_27453: 53156-53290 , PASA_asmbl_27455: 60257-65105 , PASA_asmbl_27456: 60285-65105 , PASA_asmbl_27457: 64091-64677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_070 0.0 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
2 Hb_001640_030 0.0717664555 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
3 Hb_003994_280 0.0738332013 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
4 Hb_009851_050 0.0956063945 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
5 Hb_000579_240 0.1038486986 - - phosphatidylinositol transporter, putative [Ricinus communis]
6 Hb_000004_030 0.1047205706 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
7 Hb_004680_120 0.1060117898 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
8 Hb_000062_540 0.1086553826 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000056_130 0.1090226498 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
10 Hb_000362_150 0.1098493672 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
11 Hb_005227_010 0.1103799323 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
12 Hb_002495_080 0.111711107 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
13 Hb_009569_040 0.1118397407 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
14 Hb_001491_030 0.1119327503 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
15 Hb_001018_110 0.1128115315 - - unnamed protein product [Coffea canephora]
16 Hb_000008_270 0.1128147912 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
17 Hb_000048_060 0.1130476432 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
18 Hb_000264_350 0.1143856849 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
19 Hb_002289_060 0.1150379461 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007153_050 0.1162755805 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_070 Hb_002631_070 Hb_001640_030 Hb_001640_030 Hb_002631_070--Hb_001640_030 Hb_003994_280 Hb_003994_280 Hb_002631_070--Hb_003994_280 Hb_009851_050 Hb_009851_050 Hb_002631_070--Hb_009851_050 Hb_000579_240 Hb_000579_240 Hb_002631_070--Hb_000579_240 Hb_000004_030 Hb_000004_030 Hb_002631_070--Hb_000004_030 Hb_004680_120 Hb_004680_120 Hb_002631_070--Hb_004680_120 Hb_001640_030--Hb_003994_280 Hb_152202_010 Hb_152202_010 Hb_001640_030--Hb_152202_010 Hb_000362_150 Hb_000362_150 Hb_001640_030--Hb_000362_150 Hb_001640_030--Hb_004680_120 Hb_000050_190 Hb_000050_190 Hb_001640_030--Hb_000050_190 Hb_000213_010 Hb_000213_010 Hb_003994_280--Hb_000213_010 Hb_000048_060 Hb_000048_060 Hb_003994_280--Hb_000048_060 Hb_001018_110 Hb_001018_110 Hb_003994_280--Hb_001018_110 Hb_090051_030 Hb_090051_030 Hb_003994_280--Hb_090051_030 Hb_000008_270 Hb_000008_270 Hb_009851_050--Hb_000008_270 Hb_017295_010 Hb_017295_010 Hb_009851_050--Hb_017295_010 Hb_009851_050--Hb_003994_280 Hb_028707_080 Hb_028707_080 Hb_009851_050--Hb_028707_080 Hb_009529_030 Hb_009529_030 Hb_009851_050--Hb_009529_030 Hb_000264_350 Hb_000264_350 Hb_000579_240--Hb_000264_350 Hb_002675_030 Hb_002675_030 Hb_000579_240--Hb_002675_030 Hb_010294_010 Hb_010294_010 Hb_000579_240--Hb_010294_010 Hb_005227_010 Hb_005227_010 Hb_000579_240--Hb_005227_010 Hb_007982_030 Hb_007982_030 Hb_000579_240--Hb_007982_030 Hb_008511_020 Hb_008511_020 Hb_000579_240--Hb_008511_020 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_001498_010 Hb_001498_010 Hb_004680_120--Hb_001498_010 Hb_011228_010 Hb_011228_010 Hb_004680_120--Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_004680_120--Hb_001279_030 Hb_003912_030 Hb_003912_030 Hb_004680_120--Hb_003912_030 Hb_001005_050 Hb_001005_050 Hb_004680_120--Hb_001005_050 Hb_003544_140 Hb_003544_140 Hb_004680_120--Hb_003544_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5751 8.89447 10.5431 37.3274 21.9424 23.3049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0405 7.12322 20.7209 15.974 26.8401

CAGE analysis